69.181.235.240 - - [19/Jan/2016:11:24:31 -0700] "GET /api/histories/fb86c918c0d3d33b/contents?dataset_details=bae154fe2294752e%2C6fe732485990d2ac%2C604c4e6e60e997bc%2Cf015f1cb819ec50e%2C9f6f4b3cb6cf43eb%2C3d13d598882b6eb8%2C551006fddcb290ae%2C10b9bbc646c48387%2C7670dfdf35146bc5%2Ce0ec2cf59f1fc79e%2Cee30922e5e4854db%2C9e7a0ba216194210 HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
69.181.235.240 - - [19/Jan/2016:11:24:38 -0700] "GET /tool_runner/data_source_redirect?tool_id=ucsc_table_direct1 HTTP/1.1" 302 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
galaxy.tools.actions.__init__ INFO 2016-01-19 11:24:42,801 Handled output (327.778 ms)
galaxy.tools.actions.__init__ INFO 2016-01-19 11:24:43,236 Verified access to datasets (0.023 ms)
galaxy.tools.execute DEBUG 2016-01-19 11:24:43,343 Tool [ucsc_table_direct1] created job [7019] (919.481 ms)
69.181.235.240 - - [19/Jan/2016:11:24:42 -0700] "POST /tool_runner HTTP/1.1" 200 - "https://genome.ucsc.edu/cgi-bin/hgTables" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
galaxy.jobs DEBUG 2016-01-19 11:24:44,056 (7019) Working directory for job is: /campusdata/galaxy/galaxy/database/job_working_directory/007/7019
galaxy.jobs.handler DEBUG 2016-01-19 11:24:44,070 (7019) Dispatching to sge runner
galaxy.jobs DEBUG 2016-01-19 11:24:44,378 (7019) Persisting job destination (destination id: sge_default)
galaxy.jobs.runners DEBUG 2016-01-19 11:24:44,403 Job [7019] queued (332.423 ms)
galaxy.jobs.handler INFO 2016-01-19 11:24:44,444 (7019) Job dispatched
69.181.235.240 - - [19/Jan/2016:11:24:44 -0700] "GET /api/genomes HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
69.181.235.240 - - [19/Jan/2016:11:24:44 -0700] "GET /api/datatypes?extension_only=False& HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
69.181.235.240 - - [19/Jan/2016:11:24:44 -0700] "GET /history/current_history_json HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
galaxy.jobs.runners DEBUG 2016-01-19 11:24:46,399 (7019) command is: python /campusdata/galaxy/galaxy/tools/data_source/data_source.py /campusdata/galaxy/galaxy/database/files/011/dataset_11361.dat 0; return_code=$?; python "/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/set_metadata_IaPURP.py" "/campusdata/galaxy/galaxy/database/tmp/tmp9Qt0cv" "/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/galaxy.json" "/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/metadata_in_HistoryDatasetAssociation_13512_oucw5s,/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/metadata_kwds_HistoryDatasetAssociation_13512_ZrUbrF,/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/metadata_out_HistoryDatasetAssociation_13512_twCvq7,/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/metadata_results_HistoryDatasetAssociation_13512_FO1cy9,/campusdata/galaxy/galaxy/database/files/011/dataset_11361.dat,/campusdata/galaxy/galaxy/database/job_working_directory/007/7019/metadata_override_HistoryDatasetAssociation_13512_Z_cUTF" 5242880; sh -c "exit $return_code"
galaxy.jobs.runners.drmaa DEBUG 2016-01-19 11:24:46,787 (7019) submitting file /campusdata/galaxy/galaxy/database/job_working_directory/007/7019/galaxy_7019.sh
galaxy.jobs.runners.drmaa DEBUG 2016-01-19 11:24:46,808 (7019) native specification is: -R y -pe mpi 8 -q small.q
galaxy.jobs DEBUG 2016-01-19 11:24:46,828 (7019) Changing ownership of working directory with: /usr/bin/sudo -E scripts/external_chown_script.py /campusdata/galaxy/galaxy/database/job_working_directory/007/7019 eshell 100000
galaxy.jobs.runners.drmaa DEBUG 2016-01-19 11:24:47,020 (7019) submitting with credentials: eshell [uid: 38559]
galaxy.jobs.runners.drmaa DEBUG 2016-01-19 11:24:47,129 (7019) Job script for external submission is: /campusdata/galaxy/galaxy/database/pbs/7019.jt_json
galaxy.jobs.runners.drmaa INFO 2016-01-19 11:24:47,130 Running command ['/usr/bin/sudo', '-E', 'scripts/drmaa_external_runner.py', '38559', '/campusdata/galaxy/galaxy/database/pbs/7019.jt_json']
galaxy.jobs.runners.drmaa INFO 2016-01-19 11:24:47,981 (7019) queued as 116563
galaxy.jobs DEBUG 2016-01-19 11:24:48,198 (7019) Persisting job destination (destination id: sge_default)
galaxy.jobs.runners.drmaa DEBUG 2016-01-19 11:24:48,823 (7019/116563) state change: job is queued and active
69.181.235.240 - - [19/Jan/2016:11:24:45 -0700] "GET /api/histories/fb86c918c0d3d33b/contents?dataset_details=bae154fe2294752e%2C6fe732485990d2ac%2C604c4e6e60e997bc%2Cf015f1cb819ec50e%2C9f6f4b3cb6cf43eb%2C3d13d598882b6eb8%2C551006fddcb290ae%2C10b9bbc646c48387%2C7670dfdf35146bc5%2Ce0ec2cf59f1fc79e%2Cee30922e5e4854db%2C9e7a0ba216194210 HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
galaxy.jobs.runners.drmaa DEBUG 2016-01-19 11:24:53,532 (7019/116563) state change: job is running
galaxy.jobs WARNING 2016-01-19 11:24:53,922 (7019) Ignoring state change from 'error' to 'running' for job that is already terminal
69.181.235.240 - - [19/Jan/2016:11:24:54 -0700] "GET /api/histories/fb86c918c0d3d33b/contents HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
69.181.235.240 - - [19/Jan/2016:11:24:55 -0700] "GET /api/histories/fb86c918c0d3d33b HTTP/1.1" 200 - "https://galaxy.soe.ucsc.edu/" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/47.0.2526.111 Safari/537.36"
galaxy.jobs.runners.drmaa INFO 2016-01-19 11:25:06,240 (7019/116563) job left DRM queue with following message: code 18: The job specified by the 'jobid' does not exist.
galaxy.jobs DEBUG 2016-01-19 11:25:06,412 (7019) Changing ownership of working directory with: /usr/bin/sudo -E scripts/external_chown_script.py /campusdata/galaxy/galaxy/database/job_working_directory/007/7019 galaxy 59997
galaxy.jobs DEBUG 2016-01-19 11:25:06,622 (7019) Changing ownership of working directory with: /usr/bin/sudo -E scripts/external_chown_script.py /campusdata/galaxy/galaxy/database/job_working_directory/007/7019 galaxy 59997

qname        all.q
hostname     campusrocks2-0-4.local
group        users
owner        eshell
project      NONE
department   defaultdepartment
jobname      g7019_ucsc_table_direct1_eshell_ucsc_edu
jobnumber    116563
taskid       undefined
account      sge
priority     0
qsub_time    Tue Jan 19 11:24:47 2016
start_time   Tue Jan 19 11:24:53 2016
end_time     Tue Jan 19 11:25:05 2016
granted_pe   mpi
slots        8
failed       0
exit_status  0
ru_wallclock 12
ru_utime     9.285
ru_stime     0.908
ru_maxrss    98384
ru_ixrss     0
ru_ismrss    0
ru_idrss     0
ru_isrss     0
ru_minflt    81778
ru_majflt    2
ru_nswap     0
ru_inblock   6728
ru_oublock   184
ru_msgsnd    0
ru_msgrcv    0
ru_nsignals  0
ru_nvcsw     13952
ru_nivcsw    301
cpu          10.192
mem          2.326
io           0.150
iow          0.000
maxvmem      448.820M
arid         undefined