Hi Amir,

If you are interested in adding a new datasource, take a look at:
http://database.oxfordjournals.org/content/2011/bar011.full
http://wiki.g2.bx.psu.edu/Admin/Internals/Data%20Sources

If you just want to add a file from an http/ftp location, take a look at the Upload tool, under the Get Data tool menu.

Please let us know if we can provide additional assistance.


Thanks for using Galaxy,

Dan



On Jul 14, 2011, at 1:54 PM, Amirhossein Kiani wrote:

Hey Galaxy developers!

I was wondering if anyone knows how to send data to a local galaxy instance from another server (I'm interested in sending a BAM file to Galaxy). I see that UCSC and others have done it but couldn't find anything about the API doc they are using...

Looking at the request headers from UCSC, I see that this request:

  1. tool_id:
    bx_browser
  2. URL:
  3. hguid:
    883956
  4. db:
    hg18
  5. org:
    Human
  6. hgta_table:
    seq
  7. hgta_track:
    gold
  8. hgta_regionType:
    genome
  9. hgta_outputType:
    primaryTable
  10. position:
    chr10:90997300-90997350
  11. hgta_doTopSubmit:
    get output
  12. hgsid:
    62857
  13. hgta_doGalaxyQuery:
    Send query to Galaxy

has been sent to:

http://main.g2.bx.psu.edu/tool_runner

Is this all needed? If so how is the URL to the data file passed to Galaxy?

Many thanks!
Amir
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