Hey Galaxy developers!

I was wondering if anyone knows how to send data to a local galaxy instance from another server (I'm interested in sending a BAM file to Galaxy). I see that UCSC and others have done it but couldn't find anything about the API doc they are using...

Looking at the request headers from UCSC, I see that this request:

1. tool_id:
   bx_browser
2. URL:
   http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables
3. hguid:
   883956
4. db:
   hg18
5. org:
   Human
6. hgta_table:
   seq
7. hgta_track:
   gold
8. hgta_regionType:
   genome
9. hgta_outputType:
   primaryTable
10. position:
    chr10:90997300-90997350
11. hgta_doTopSubmit:
    get output
12. hgsid:
    62857
13. hgta_doGalaxyQuery:
    Send query to Galaxy

has been sent to:

http://main.g2.bx.psu.edu/tool_runner

Is this all needed? If so how is the URL to the data file passed to Galaxy?

Many thanks!

Amir

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