Thanks Ryan,<div><br></div><div>I have been following that guide. I can configure the galaxy host to be an exec host, although it makes more sense to be a submission host.</div><div><br></div><div>I hope this can be clarified in the future revise of the documentation.</div>
<div><br></div><div>Cheers,</div><div>Derrick</div><div><br></div><div><br><div class="gmail_quote">On Tue, Jan 10, 2012 at 12:57 PM, Ryan Golhar <span dir="ltr">&lt;<a href="mailto:ngsbioinformatics@gmail.com">ngsbioinformatics@gmail.com</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Derrick,<div><br></div><div>Take a look at the section entitled &quot;Job runner URL&quot; on <a href="http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster" target="_blank">http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster</a>.  But as I understand it, you don&#39;t need to do anything since the drmaa library is part of your SGE installation.  Just make the node Galaxy runs on an exec host.  </div>

<div><br></div><div>Ryan<br><br><div class="gmail_quote"><div><div class="h5">On Mon, Jan 9, 2012 at 8:45 PM, Derrick LIN <span dir="ltr">&lt;<a href="mailto:klin938@gmail.com" target="_blank">klin938@gmail.com</a>&gt;</span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
Hi guys,<div><br></div><div>I am trying to configure our test galaxy to run on our SGE cluster <a href="http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster" target="_blank">http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster</a>. </div>


<div><br></div><div>This is my first time to come across to drmaa, so a bit confused.</div><div><br></div><div>I installed teh galaxy on a NFS location where can be accessed clsuter-wide. I have configured in universe_wsgi.ini:</div>


<div><br></div><div><div>start_job_runners = drmaa</div><div>default_cluster_job_runner = drmaa:///</div></div><div><br></div><div>and export the libdrmaa path:</div><div>export DRMAA_LIBRARY_PATH=/opt/sge/lib/lx-amd64/libdrmaa.so.1.0</div>


<div><br></div><div>Sound like that&#39;s all. But I am not sure how galaxy can actually bind to my cluster? Anywhere I need to specify the qmaster URL etc?</div><div><br></div><div>Or simply configure galaxy host to be a submission host of the cluster, the galaxy will fetch all information by itself?</div>


<div><br></div><div>Kind regards,</div><div>Derrick</div>
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