Hey Matthias,

I noticed that this visualization has already been added and should be working in release 17.05 and a d3_hierarchy file. Its documented at https://github.com/galaxyproject/galaxy/tree/dev/config/plugins/visualizations/unipept.

Example files are available here:

https://github.com/unipept/unipept-visualizations/tree/master/examples/data

Now here is the issue I noticed, once you upload one of these example files, you need to select the file in the history, click on the pencil icon and change the datatype to 'd3_hierarchy' before attempting to visualize it. You cannot select the correct datatype in the upload view. I will test this a little bit more and fix it if necessary for the next release.

I hope this helps.

Thanks again.

On Mon, Aug 28, 2017 at 4:23 AM, Matthias Bernt <m.bernt@ufz.de> wrote:

Hi Sam,

thanks for the answer. So far I have not configured anything, I was hoping that it works out of the box :).

Could you point me to some documentation where the setup is explained?

Best,
Matthias

On 25.08.2017 19:05, Aysam Guerler wrote:

Hi Matthias,

Have you added the visulization to Charts or the regular Galaxy visualization framework? If it is the latter please make sure that you correctly specified the datatype in your XML file. Your visualization should than appear in the drop-down list in the history.

Thanks,
Sam

On Fri, Aug 25, 2017 at 5:25 AM, Matthias Bernt <m.bernt@ufz.de <mailto:m.bernt@ufz.de>> wrote:

Dear list,

I can not get the wonderful unipept visualization to work on our
Galaxy instance (a test instance on the dev branch). I get the message:
"Unfortunately we could not identify a suitable plugin...."

The file I try to visualize was generated by unipept (pept2lca) and
is of format d3_hierarchy.

Could someone tell me if I need to install / configure something to
get this running?

Thanks a lot.

Best,
Matthias

P.S. This might be also of interest for others, since this
visualization is used in the Metaproteomics tutorial of the GTN.

--
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Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
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Phone +49 341 235 482296 <tel:%2B49%20341%20235%20482296>,
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Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt@ufz.de, www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------