Re: [galaxy-dev] Galaxy code: data libraries

5 Dec 2013

      Hi John,
It works very fine. Thank you again for your help, very useful :).
Have a nice day,
Mish

From: misharl@hotmail.com
To: chilton@msi.umn.edu
Date: Mon, 2 Dec 2013 08:51:28 +0000
CC: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Galaxy code: data libraries

Hi John,

Thank you very much for your reply! I will try this, and inform you if it works correctly.

Thank you again,

Mish
...
Date: Thu, 28 Nov 2013 15:06:47 -0600
Subject: Re: [galaxy-dev] Galaxy code: data libraries
From: chilton@msi.umn.edu
To: misharl@hotmail.com
CC: galaxy-dev@lists.bx.psu.edu
I think the relevant piece of code is in
templates/webapps/galaxy/ibrary/common/common.mako.
The lines
                                <select name="link_data_only">
                                    %if not link_data_only or
link_data_only == 'copy_files':
                                        <option value="copy_files"
selected>Copy files into Galaxy
                                        <option
value="link_to_files">Link to files without copying into Galaxy
                                    %else:
                                        <option
value="copy_files">Copy files into Galaxy
                                        <option value="link_to_files"
selected>Link to files without copying into Galaxy
                                    %endif
                                </select>
could probably be modified a few different ways. I have not really
tried this but if you really do want to eliminate copying all together
you can probably just replace it with:
<select name="link_data_only">
                                      <option value="link_to_files"
selected>Link to files without copying into Galaxy
                                </select>
Alternatively, you could probably modify the default to be linking by
replacing this with:
<select name="link_data_only">
                                    %if link_data_only and
link_data_only == 'copy_files':
                                        <option
value="link_to_files">Link to files without copying into Galaxy
                                        <option value="copy_files"
selected>Copy files into Galaxy
                                    %else:
                                        <option value="link_to_files"
selected>Link to files without copying into Galaxy
                                        <option
value="copy_files">Copy files into Galaxy
                                    %endif
                               </select>
Hope this helps!
-John
On Thu, Nov 28, 2013 at 6:56 AM, Misharl mon <misharl@hotmail.com> wrote:
...
Hi eveybody,
Is there a way in the code of Galaxy, to force the users to use "link to
files without copying in Galaxy" by hiding the "copy files into Galaxy"
option in the interface, when they add datasets in their library? We want to
avoid users to click on "copy files into Galaxy" by mistake.
Thanks in advance to all
Mish
Hi everybody,
In my lab, after upgrading our Galaxy instance to the latest version, we
have a problem with displaying tabular files.
Any idea from where the problem can come?
Thanks in advance to all.
Mish
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all
replies on the list by using "reply all" in your mail client. To manage your
subscriptions to this and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified
search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/