I’m suddenly getting this error today when I tried to restart Galaxy:

Starting galaxy...

Some eggs are out of date, attempting to fetch...

Warning: setuptools (a dependent egg of sqlalchemy-migrate) cannot be fetched

Fetched http://eggs.galaxyproject.org/bioblend/bioblend-0.4.2-py2.7.egg

One of Galaxy's managed eggs depends on something which is missing, this is almost certainly a bug in the egg distribution.

Dependency "bioblend" requires "pyyaml"

Traceback (most recent call last):

File "./scripts/fetch_eggs.py", line 37, in <module>

c.resolve() # Only fetch eggs required by the config

File "/ifs/user/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve

egg.resolve()

File "/ifs/user/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 168, in resolve

dists = pkg_resources.working_set.resolve( ( self.distribution.as_requirement(), ), env, self.fetch )

File "/ifs/user/galaxy/galaxy-dist/lib/pkg_resources.py", line 569, in resolve

raise VersionConflict(dist,req) # XXX put more info here

pkg_resources.VersionConflict: (bioblend 0.4.2 (/ifs/user/galaxy/galaxy-dist/eggs/bioblend-0.4.2-py2.7.egg), Requirement.parse('pyyaml'))

pyyaml is installed and I haven’t updated anything that would cause a conflict. What do I do to fix this?

Thanks,

Dori

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Dori Sajdak

Senior Systems Administrator

State University of NY at Buffalo

Center for Computational Research

701 Ellicott St

Buffalo, NY 14203

Phone: (716) 881-8934

Fax: (716) 849-6656

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