Perfect thanks! On Mon, Jan 6, 2014 at 1:16 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
Hey Greg,
Sorry about the delay on this over the holidays. I see what you're working with now. If you install your customizations in a portable manner in /mnt/galaxyData that should be safe and we'll make sure to provide a smooth migration path going forward should that change. Only 'galaxy' type clusters will have /mnt/galaxy and data only clusters should continue to work just fine with /mnt/galaxyData.
-Dannon
On Mon, Dec 30, 2013 at 1:33 PM, greg <margeemail@gmail.com> wrote:
Just following up on this. So it's ok to do all of my customizations in /mnt/galaxyData?
Or am I doing something wrong, and I need to figure out how to boot up into a version that has /mnt/galaxy?
Thanks again,
Greg
On Fri, Dec 20, 2013 at 2:49 PM, greg <margeemail@gmail.com> wrote:
Yes, I just launched it a few hours ago.
I just went here and filled out the form: https://usegalaxy.org/cloudlaunch
I chose "data cluster" when prompted and enter 5GB.
On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
And is this a new instance you've just launched? If so, how'd you launch it?
On Fri, Dec 20, 2013 at 2:37 PM, greg <margeemail@gmail.com> wrote:
Here's what I'm seeing:
ubuntu@ip-10-182-195-79:/$ ls / bin boot dev etc export home initrd.img lib lib64 lost+found media mnt opt proc root run sbin selinux srv sys tmp usr var vmlinuz ubuntu@ip-10-182-195-79:/$ ls mnt cm galaxyData lost+found transient_nfs ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ export files tmp upload_store
On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
Does /mnt/galaxy exist, and does it have all of the expected galaxy components? /mnt/galaxyData might exist, but it should be either empty or a symlink to /mnt/galaxy if I remember correctly.
If you're launching your cluster from usegalaxy.org/cloudlaunch, you should always be using the latest stuff.
On Fri, Dec 20, 2013 at 2:13 PM, greg <margeemail@gmail.com> wrote: > > Thanks. I was wrong before. I actually do see a /mnt/galaxyData. > > Should I not being seeing that? Am I not on cloudman 2.0? > > -Greg > > On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker > <dannon.baker@gmail.com> > wrote: > > With the Cloudman 2.0 release, the galaxyData and galaxyTools > > volumes > > have > > been merged to a single 'galaxy' volume. /mnt/galaxy is now your > > single > > persistent (by default, at least) volume, so, if you install your > > tool > > to > > here and share everything should work as expected. > > > > -Dannon > > > > > > On Fri, Dec 20, 2013 at 1:53 PM, greg <margeemail@gmail.com> > > wrote: > >> > >> Hi guys, > >> > >> I just launched an instance from > >> https://usegalaxy.org/cloudlaunch > >> and > >> chose "data cluster" when prompted. > >> > >> Everything seems to have gone ok, but when I ssh in, I don't see > >> /mnt/galaxyData > >> > >> > >> Background: > >> > >> Basically we have a bioinformatics tool that needs SGE to run. > >> So I > >> want to install it on a galaxy cloud instance and then provide > >> the > >> share string to other researchers. > >> > >> I did this successfully a year or two ago by installing it to > >> /mnt/galaxyData. > >> > >> Thanks, > >> > >> Greg > >> ___________________________________________________________ > >> Please keep all replies on the list by using "reply all" > >> in your mail client. To manage your subscriptions to this > >> and other Galaxy lists, please use the interface at: > >> http://lists.bx.psu.edu/ > >> > >> To search Galaxy mailing lists use the unified search at: > >> http://galaxyproject.org/search/mailinglists/ > > > >