On Oct 28, 2015, at 12:56 AM, 홍윤지 <yoong0525@gmail.com> wrote:

hey, my name is yoong in korean student .

i'd like to run the program name Mapsplice2, so i made a xml file, and submit that

this is my xml file..

<tool id="mapsplice" name="Mapsplice" version="2.2.0">

    <description>MapSplice2 Description</description>

    <command interpreter="python">

    /home/yoong/galaxy/tools/MapSplice-v2.1.9/mapsplice.py -o $alignments.files_path -p 20 --qual-scale phred33 --bam --fusion -c /home/yoong/1_reference/hg19 -x /home/yoong/1_reference/BowtieIndex -1 $input_reads_1 -2 $input_reads_2

    </command>

    <inputs>

        <param format="fastq" name="input_reads_1" type="data" label="Source file1"/>

        <param format="fastq" name="input_reads_2" type="data" label="Source file2"/>

    </inputs>

    <outputs>

        <data format="bam" name="alignments" label="alignments.bam"/>

        <data format="txt" name="deletions" label="deletions.txt"/>

        <data format="txt" name="fusions_candidates" label="fusions_candidates.txt"/>

        <data format="txt" name="fusions_raw" label="fusions_raw"/>

        <data format="txt" name="insertions" label="insertions.txt"/>

        <data format="txt" name="junctions" label="junctions.txt"/>

        <data format="txt" name="stats" label="stats.txt"/>

    </outputs>

    <help>

        Help

    </help>

</tool>

and, look at the report error, there is no special error... what's was the problom..? Do I something wrong ?... 

plz help me...!! Thank you ...