Hi Ian Not sure if this is the cause of the problem but the interpreter specified in the <command> tag of your XML has a typo i.e. you have "pytyhon" rather than "python". I'm guessing this is why the tool doesn't run? HTH, best wishes Peter On 09/10/13 13:48, UMD Bioinformatics wrote:
Hello,
I'm trying to incorporate a python tool that can accommodate multiple input files and the number of output files cannot be determined prior to running the tool. I've been though the help section at http://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_o... <http://wiki.galaxyproject.org/Admin/Tools/Multiple Output Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run> but I'm not getting any results. The tool isn't even running and creating the proper output in the tool directory. I've felt with the naming convention requited by Galaxy and the tool works from the command line. I know that the issue isn't with my local Galaxy install because a generic tool I've installed that produces multiple outputs works fine. I've attached my code and the XML file. Any help would be appreciated.
Cheers Ian
-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482