Hi Steve, What version of MACs are you using? We have: $macs --version macs 1.3.7.1 (Oktoberfest, bug fixed #1) I tried a small SAM file (test-data/1.sam) on our test server and did not receive the error you listed. (No peaks were called due to the size of the file, but it seemed to recognize the format ok). Thanks, Dan On Apr 30, 2010, at 11:10 AM, Steve Taylor wrote:
On 30/04/2010 15:37, Daniel Blankenberg wrote:
Hi Steve,
The latest version in the repository and on the test server accepts bed, sam, bam, eland and elandmulti for single-end and elandmulti only for paired-end. The version currently on the main public server accepts bed, sam, and bam for single-end with paired-end not functioning. The newest version of MACs will be available on the main public server the next time it is updated.
Strange. On our local Galaxy instance I got
ERROR:root:Format "SAM" cannot be recognized!
and the bowtie (SAM) format was generated from within Galaxy.
Any ideas why?
Steve
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