Hi Vincent, I think there was an error that was fixed recently. If you can, please try yo upgrade or wait a few more days until the new galaxy-dist version is released. Bjoern 2014-02-04 navratil <navratil@prabi.fr>:
Dear galaxy-dev team,
We have configured a galaxy-dist server (stable release) behind an Apache2 proxy (with mod_xsendfile) by following the galaxy wiki.
We would like to use the galaxy embeded user authentification with require_login=True option instead of a remote_user configuration on the proxy side.
With require_login = False it works but with require_login=True configuration we fail to load .bam files into IGV (local) :
The IGV (Version 2.3.18) send this error: *INFO [2014-02-04 16:05:56,660] [MessageUtils.java:60] [Thread-9] Error loading http://XXXXXX/display_application/03501d7626bd192f/igv_bam/local_default/845... <http://XXXXXX/display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam>: An error occurred while accessing: http://XXXXXX/display_application/03501d7626bd192f/igv_bam/local_default/845... <http://XXXXXX/display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam><br>Invalid GZIP** header*
and the galaxy-server send this error_log:
*----------------------------------------* *XXXXXX - - [04/Feb/2014:16:05:40 +0200] "HEAD /display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam HTTP/1.1" 302 - "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM"* *XXXXXX - - [04/Feb/2014:16:05:40 +0200] "HEAD /root HTTP/1.1" 200 - "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM"* *----------------------------------------* *Exception happened during processing of request from ('127.0.0.1', 46142)* *Traceback (most recent call last):* * File "/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread* * self.finish_request(request, client_address)* * File "/usr/lib/python2.7/SocketServer.py", line 334, in finish_request* * self.RequestHandlerClass(request, client_address, self)* * File "/usr/lib/python2.7/SocketServer.py", line 651, in __init__* * self.finish()* * File "/usr/lib/python2.7/SocketServer.py", line 710, in finish* * self.wfile.close()* * File "/usr/lib/python2.7/socket.py", line 279, in close* * self.flush()* * File "/usr/lib/python2.7/socket.py", line 303, in flush* * self._sock.sendall(view[write_offset:write_offset+buffer_size])* *error: [Errno 32] Broken pipe* *----------------------------------------* *XXXXXX - - [04/Feb/2014:16:05:40 +0200] "GET /display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam HTTP/1.1" 302 - "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM"* *XXXXXX - - [04/Feb/2014:16:05:40 +0200] "GET /root HTTP/1.1" 200 - "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM*
Any idea ?
Vincent
-- Vincent Navratil, PhD IR UCBL - PRABI http://www.prabi.fr Bâtiment Gregor Mendel Université Claude Bernard - Lyon 1 16, rue Raphaël Dubois 69622 VILLEURBANNE CEDEX Tel: +33 472432826
My 'ome' page http://vinavratil.free.fr
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