I'm sorry,
I forgot to add the error log:
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'setup_requires'
warnings.warn(msg)
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'install_requires'
warnings.warn(msg)
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'zip_safe'
warnings.warn(msg)
Warning: Assuming default configuration (numexpr/tests/{setup_tests,setup}.py was not found)Traceback (most recent call last):
File "setup.py", line 227, in <module>
setup_package()
File "setup.py", line 223, in setup_package
setup(**metadata)
File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py", line 62, in run
r = self.setuptools_run()
File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py", line 56, in setuptools_run
self.do_egg_install()
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install
self.run_command('bdist_egg')
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/bdist_egg.py", line 151, in run
self.run_command("egg_info")
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/egg_info.py", line 11, in run
_egg_info.run(self)
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 180, in run
self.find_sources()
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 207, in find_sources
mm.run()
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 291, in run
self.add_defaults()
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 320, in add_defaults
sdist.add_defaults(self)
File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/sdist.py", line 124, in add_defaults
if not self.distribution.include_package_data:
AttributeError: NumpyDistribution instance has no attribute 'include_package_data'
Thank you very much,
Dear Galaxy list,
I do not know if it is the right place to ask my question. I would like to create a tool dependency package for numexpr (a python library).
I tried to do it taking examples from different tool dependency packages from iuc for example.
I added my repository to the testtoolshed but when I tried to install it. The directory lib/python of my tool is empty.
My repository is :
package_python_2_7_numexpr_2_6_2
The big difference I see between the one from iuc and mine is the url:
For example, for pybigwig, the URL is :
https://pypi.python.org/packages/source/p/pyBigWig/pyBigWig-0.1.9.tar.gz
For my library numexpr I could not find such a url so I put the one I thought would be the good one:
Thank you very much for your help,