Hi all,<div><br></div><div>Have looked through the list archives regarding this without much luck.</div><div><br></div><div>I have a repeat parameter which contains a boolean based conditional. I wrote a simple test case for it but I think the test keeps failing at the boolean parameter..</div>
<div><br></div><div>input section looks like:</div><div><br></div><div>            &lt;repeat name=&quot;inputs&quot; title=&quot;Input read libraries&quot;&gt;<br></div><div><div>                        &lt;conditional name=&quot;is_separate&quot;&gt;</div>
<div><span class="" style="white-space:pre">				</span>&lt;param name=&quot;separate&quot; type=&quot;boolean&quot; checked=&quot;false&quot; truevalue=&quot;-separate&quot; falsevalue=&quot;&quot; label=&quot;Are the reads paired and in two different files?&quot; /&gt;</div>
<div><span class="" style="white-space:pre">				</span>&lt;when value=&quot;&quot;&gt;</div><div><span class="" style="white-space:pre">					</span>&lt;param name=&quot;forwards_file&quot; type=&quot;data&quot; format=&quot;fasta,fastq,raw,sam,bam&quot; label=&quot;Read dataset&quot;/&gt;</div>
<div><span class="" style="white-space:pre">				</span>&lt;/when&gt;</div><div><span class="" style="white-space:pre">				</span>&lt;when value=&quot;-separate&quot;&gt;</div><div><span class="" style="white-space:pre">					</span>&lt;param name=&quot;forwards_file&quot; type=&quot;data&quot; format=&quot;fasta,fastq,raw,sam,bam&quot; label=&quot;Read dataset for direction 1&quot;/&gt;</div>
<div><span class="" style="white-space:pre">					</span>&lt;param name=&quot;reverse_file&quot; type=&quot;data&quot; format=&quot;fasta,fastq,raw,sam,bam&quot; label=&quot;Read dataset for direction 2&quot;/&gt;</div><div>
<span class="" style="white-space:pre">				</span>&lt;/when&gt;</div><div><span class="" style="white-space:pre">			</span>&lt;/conditional&gt;</div></div><div><br></div><div>            .......</div><div>           &lt;/repeat&gt;</div>
<div><br></div><div>test section looks like:</div><div><br></div><div>&lt;tests&gt;</div><div>    &lt;test&gt;</div><div>            &lt;param name=&quot;start_kmer&quot; value=&quot;21&quot;/&gt;</div><div>            &lt;param name=&quot;end_kmer&quot; value=&quot;29&quot;/&gt;</div>
<div>            &lt;param name=&quot;inputs.is_separate.separate&quot; value=&quot;false&quot;/&gt;</div><div>            &lt;param name=&quot;inputs.is_separate.forwards_file&quot; value=&quot;vopt_test_reads.dat&quot; ftype=&quot;fasta&quot;/&gt;</div>
<div>            &lt;output name=&quot;contigs&quot; file=&quot;vopt_test_contigs.dat&quot;/&gt;</div><div>     &lt;/test&gt;</div><div>&lt;/tests&gt;</div><div><br></div><div>The output from run_functional tests is:</div>
<div><br></div><div><div>======================================================================</div><div>ERROR: test_tool_000000 (functional.test_toolbox.TestForTool_velvetoptimiser_vlsci)</div><div>Velvet Optimiser vlsci ( velvetoptimiser_vlsci ) &gt; Test-1</div>
<div>----------------------------------------------------------------------</div><div>Traceback (most recent call last):</div><div>  File &quot;/home/simon/Galaxy/galaxy-dist/test/functional/test_toolbox.py&quot;, line 171, in test_tool</div>
<div>    self.do_it( td, shed_tool_id=shed_tool_id )</div><div>  File &quot;/home/simon/Galaxy/galaxy-dist/test/functional/test_toolbox.py&quot;, line 76, in do_it</div><div>    page_inputs =  self.__expand_grouping(testdef.tool.inputs_by_page[0], all_inputs)</div>
<div>  File &quot;/home/simon/Galaxy/galaxy-dist/test/functional/test_toolbox.py&quot;, line 131, in __expand_grouping</div><div>    expanded_inputs.update( self.__expand_grouping( { new_prefix : r_value }, declared_inputs, prefix = new_prefix ) )</div>
<div>  File &quot;/home/simon/Galaxy/galaxy-dist/test/functional/test_toolbox.py&quot;, line 118, in __expand_grouping</div><div>    if declared_inputs[ <a href="http://value.test_param.name">value.test_param.name</a> ] == case.value:</div>
<div>KeyError: &#39;separate&#39;</div><div>-------------------- &gt;&gt; begin captured stdout &lt;&lt; ---------------------</div><div>kmer_step not declared in tool test, will not change default value.</div><div>filetype not declared in tool test, will not change default value.</div>
<div><br></div><div>--------------------- &gt;&gt; end captured stdout &lt;&lt; ----------------------</div><div>-------------------- &gt;&gt; begin captured logging &lt;&lt; --------------------</div><div>galaxy.web.framework: DEBUG: Error: this request returned None from get_history(): <a href="http://localhost:8326/">http://localhost:8326/</a></div>
<div>galaxy.web.framework: DEBUG: Error: this request returned None from get_history(): <a href="http://localhost:8326/">http://localhost:8326/</a></div><div>galaxy.web.framework: DEBUG: Error: this request returned None from get_history(): <a href="http://localhost:8326/user/logout">http://localhost:8326/user/logout</a></div>
<div>galaxy.web.framework: DEBUG: Error: this request returned None from get_history(): <a href="http://localhost:8326/">http://localhost:8326/</a></div><div>--------------------- &gt;&gt; end captured logging &lt;&lt; ---------------------</div>
<div><br></div><div>----------------------------------------------------------------------</div><div>Ran 1 test in 0.675s</div><div><br></div><div>FAILED (errors=1)</div></div><div><br></div><div>My question: Can the testing framework handle the nesting of the boolean, conditional and repeat parameters or have I made a mistake in the test xml?</div>
<div><br></div><div><br></div><div>Cheers,</div><div><br></div><div>Simon Gladman</div><div>VBC/VLSCI</div><div>Monash University</div><div>Australia.</div>