Display applications are extensively documented here:
http://wiki.galaxyproject.org/Admin/Tools/External%20Display%20Applications%20Tutorial

--
James Taylor, Assistant Professor, Biology/CS, Emory University


On Thu, Jun 20, 2013 at 2:20 AM, shashi shekhar <me_shashi29@yahoo.co.in> wrote:
> Hi james,
>
> can you  share some examples of display application . and in which tool you
> use for display application in galaxy ?
>
>
> Regards
> shashi
>
> ________________________________
> From: James Taylor <james@taylorlab.org>
> To: shashi shekhar <me_shashi29@yahoo.co.in>
> Cc: Ross <ross.lazarus@gmail.com>; "galaxy-dev@lists.bx.psu.edu"
> <galaxy-dev@lists.bx.psu.edu>
> Sent: Wednesday, 19 June 2013 7:03 PM
>
> Subject: Re: [galaxy-dev] visulaization tool
>
> Tightly integrated interactive visualizations like Trackster need to be web
> based (implemented in Javascript). See our paper that just came out in BMC
> genomics. Note there is already a phylogenetic tree visualization tool
> (phyloviz) that was built by Tomithy Too. Extensions to that for additional
> features would be welcome.
>
> For a Java based visualization tool you need to take a completely different
> approach. Look at Display Applications support, specifically examples like
> IGB and IGV.
>
> On Jun 19, 2013, at 7:56 AM, shashi shekhar <me_shashi29@yahoo.co.in> wrote:
>
> Hi Ross,
> Actually i have to add the  visualization which  will be interactive . it
> will take dataset  from galaxy .it will be in the same way as tracker works
> .
> in stead of tracker i want to add my own visualization tool. from wehere
> should i start  to replace tracker with my own visulization tool.
> Regards
> shashi
>
> ________________________________
> From: Ross <ross.lazarus@gmail.com>
> To: shashi shekhar <me_shashi29@yahoo.co.in>
> Cc: Hans-Rudolf Hotz <hrh@fmi.ch>; "galaxy-dev@lists.bx.psu.edu"
> <galaxy-dev@lists.bx.psu.edu>
> Sent: Wednesday, 19 June 2013 5:02 PM
> Subject: Re: [galaxy-dev] visulaization tool
>
> Shashi,
> Thanks for the additional information.
> AFAIK: If it's command line driven and spews out pdf's, adapt any similar
> tool that spews out pdfs like fastqc.
> Galaxy tool execution is isolated from the user and from Galaxy itself, so
> communication is just not possible if it's interactive - unless you hack the
> tool into Galaxy itself or something. There is no documentation for that.
>
>
>
> On Wed, Jun 19, 2013 at 9:01 PM, shashi shekhar <me_shashi29@yahoo.co.in>
> wrote:
>
> Hi Ross,
> thanks for the reply . actually i want to use TreeView as visulaization
> tool.
>
> TreeView X is an open source and multi-platform program to display
> phylogenetic trees. It can read and display NEXUS and Newick format tree
> files (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other
> programs). It allows one to order the branches of the trees, and to export
> the trees in SVG format.
>
> i have to add  treeviewx in galaxy..
>
> Regards
> shashi
>
>
> ________________________________
> From: Ross <ross.lazarus@gmail.com>
> To: shashi shekhar <me_shashi29@yahoo.co.in>
> Cc: Hans-Rudolf Hotz <hrh@fmi.ch>; "galaxy-dev@lists.bx.psu.edu"
> <galaxy-dev@lists.bx.psu.edu>
> Sent: Wednesday, 19 June 2013 3:28 PM
>
> Subject: Re: [galaxy-dev] visulaization tool
>
> Shashi,
> Hans made a brave guess based on your vague question, but you'll probably
> get better answers if you do us all a favour and make an effort to provide
> unambiguous detail about exactly what you want to achieve.
>
> If there is a working Galaxy tool that does what you need but using a
> different "visualisation program" (whatever you mean by that vague term),
> substituting your executable will probably be relatively trivial. eg do you
> consider the Html object produced by the fastqc or the image from the
> scatterplot tool to be "visualisation program" outputs? If so, clone a
> working tool.
>
>
> On Wed, Jun 19, 2013 at 5:37 PM, shashi shekhar <me_shashi29@yahoo.co.in>
> wrote:
>
>
> Hi,
>
> I want to add the the complete separate tool in galaxy . how will i do it
> ..i don't want to use existing visulaization tool.
>
> Regards
> shashi
>
> ________________________________
> From: Hans-Rudolf Hotz <hrh@fmi.ch>
> To: shashi shekhar <me_shashi29@yahoo.co.in>
> Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu>
> Sent: Wednesday, 19 June 2013 12:29 PM
> Subject: Re: [galaxy-dev] visulaization tool
>
> Hi Shashi
>
> Have a look at:
>
> http://wiki.galaxyproject.org/Learn/Visualization
> http://wiki.galaxyproject.org/Visualization%20Setup
>
>
> Regards, Hans-Rudolf
>
>
>
> On 06/19/2013 08:07 AM, shashi shekhar wrote:
>> Hi,
>>
>> i want to add new  visualization tool in galaxy . can i get the required
>> documents ?
>>
>> can u send me the details how can i add the visualization tool in  galaxy
>> .
>>
>>
>>
>> Regards
>> shashi
>
>
>
>
>
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