Ah, yes. That seems to have been added a couple months ago. The BioTeam appliance just missed that update by a week or two. I’ll go bug them. Thanks. FWIW, I am using bioblend, and I got my example from the bioblend documentation: http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bi... -john On Apr 10, 2014, at 5:42 AM, Nicola Soranzo <soranzo@crs4.it> wrote:
Il 2014-04-09 22:18 John Marmaduke Eppley ha scritto:
As far as I can figure out, the parameter map for running a workflow via the API is supposed to look like this:
{'blastn': {'param': 'evalue', 'value': '1e-06’}}
This doesn’t seem to allow for multiple parameters to a single tool. Is there a way to submit multiple parameters that I’m missing? For example:
{'blastn': {'param': 'evalue', 'value': '1e-06’, 'param': ‘identity_cutoff’, ‘value’: ’70’}}
…will not work. The dict() container doesn’t allow duplicate keys, it just overwrites the values.
Hi John, you are using the old and deprecated syntax, you can use instead:
{'blastn': {'evalue': '1e-06', 'identity_cutoff': 70}}
For more details look at _update_step_parameters() function documentation:
https://bitbucket.org/galaxy/galaxy-dist/src/tip/lib/galaxy/webapps/galaxy/a...
Or look at this complete example:
https://github.com/crs4/bioblend/blob/objects/docs/examples/w5_galaxy_api.py
Moreover, you may consider using the more high-level bioblend API:
http://bioblend.readthedocs.org/en/latest/
Best, Nicola ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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