Hi Pieter, Thanks for the reply, but from the looks of it, this is a way to incorporate webservice clients into galaxy. What I want is slightly different. I'm talking about adding a normal command line tool (an aligner for example) but I'm not willing to write a wrapper each time (the wrapper for BWA for example is 327 lines). If a computer readable description of the interface exists, this description can be used to generate a python wrapper. I mentioned WSDL because this also gives a description of an interface, but any equivalent description would of course be fine. Ideally, such a description is maintained by the developer of the tool in question. With kind regards, Jeroen. On Fri, May 13, 2011 at 02:16:37PM +0200, Pieter Neerincx wrote:
Hi Jeroen,
You can use web services thanks to the work from Sumedha Ganjoo et al. from the University of Georgia. You can find that on the community site:
Tools Shed -> Data Source -> Suite of Web service addition tools.
Cheers,
Pi
On May 13, 2011, at 1:41 PM, J. F. J. Laros wrote:
Dear,
I need to add a number of tools to my local Galaxy installation, but the size of the wrappers I've seen keep me from writing one.
Are there wrapper generators to make this task easier? If not, I might want to make one. A possible implementation I'm considering is to first make a (WSDL) description of any command line tool (using soaplab2 for example) and by making a general wrapper builder that takes WSDL as input.
Does something similar already exist and if not, does this idea sound okay?
With kind regards, Jeroen.
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