I’ll give it a shot.
Thanks for the tip.
brad
—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs
Have a look at:
https://github.com/galaxyproject/galaxy/blob/master/lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py
This will attempt to find any dependencies previously install from a
toolshed to use in Planemo.
Christian
PS.
If your package is not exactly named you may have to comment out the
condition
if package_name.lower().startswith("package_" + name.lower()):
Salmon works in a similar way to kallisto.
I’ve been tweaking the test toolshed wrapper of that
lately, but I have not yet figured out how to get planemo to test it
properly - as soon as I do i’ll publish it to the toolshed.
Brad
—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs
Salmon works in a similar way to kallisto.
I’ve been tweaking the test toolshed wrapper of that
lately, but I have not yet figured out how to get planemo to test it
properly - as soon as I do i’ll publish it to the toolshed.
Brad
—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs
Hi,
While working on Trinity, I made a package (but no wrapper) for it
in
IUC:
https://github.com/galaxyproject/tools-iuc/pull/613
It is not yet merged because of a licence problem though...
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To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/I've had requests from users to
install Kallisto as Galaxy tool. I
didn't see any wrappers or evidence of wrappers in my searching, but I
thought I'd ask here to see if anyone is working on or interested in
working on such a thing.