Jen,

Thank you for the information.

I am using galaxy cloud to try the trickster for one of the processed chipseq analysis. However, there is no visualization for the bed file created from galaxy. Meantime,  I am having problem to get back to galaxy now. Here is the error message as below --

The proxy could not connect to the destination in time.

URL: http://ec2-107-20-10-72.compute-1.amazonaws.com/cloud

I have tried to re-launch the cloud instance, as well as directly access the DNS from aws, and keep getting the same error.

Is this the bug? Please help to fix this since I have data there.

Thanks!

Kathryn

From: Jennifer Jackson [mailto:jen@bx.psu.edu]
Sent: Monday, May 13, 2013 6:18 PM
To: Sun, Wenping [USA]
Cc: galaxy-user@lists.bx.psu.edu
Subject: [External] Re: [galaxy-user] Question on galaxy data visualization

Hello Kathryn,

Trackster is the primary data visualization tool and can be accessed by clicking on the mini graph icon within a dataset:



or by going to "Visualization" in the upper menu bar and starting a new track browser.
http://wiki.galaxyproject.org/Learn#Visualization

If you are interested, for certain datasets, the icon will also offer other options: Circster and/or Scatterplot. The tool group "Graph/Display Data" has graphing tools and tools that prepare data to be visualized. The tool group "Motif Tools" has a sequence logo generator, and the groups " NGS: QC and manipulation" and " BEDTools" have more graphing tools.

Hopefully this helps,

Jen
Galaxy team

On 5/13/13 11:08 AM, Sun, Wenping [USA] wrote:

Dear galaxy group,
 
I have question on the data visualization from output of galaxy pipeline. Is there any ideogram tool inside of galaxy? 
 
Regards,
Kathryn

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