26 Apr
2016
26 Apr
'16
1:46 p.m.
I'm playing around with creating a Galaxy wrapper for custom tool I've created. My tool takes a single parameter, and SRA ID. In command block, I have something like this: <command> ${GALAXY_ROOT_DIR}/tools/mycustomtools/doSomething.pl --sra $sraid </command> <inputs> <param name="sraid" ... /> </inputs> <outputs> <data format="txt", name="out1", from_work_dir="${sraid}.data" /> <data format="txt", name="out2", from_work_dir="${sraid}.txt" /> </outputs> Galaxy doesn't like thr $sraid in the output. I see from the docs I need to use discover_datasets. It would be nice to use a parameter such as what I have to name output file as my script names output files use an input parameter as the base.