I saw the same phenomenon. I think it stems from the current version of compute_q_values pointing to unavailable revisions of both R and the bioc_qvalue R package. Whoever maintains the compute_q_values needs to straighten out the revision ids. David Hoover Helix Systems Staff National Institutes of Health On Apr 17, 2014, at 1:38 PM, Tony Kusalik <kusalik@cs.usask.ca> wrote:
Hi,
I am having a problem with updating our local Galaxy server, and I am hoping someone can help me.
Yesterday I performed a 'hg incoming' command. A bunch of updates were applied, from changeset 12443:ec9d31a8bc04 to changeset 13068:c05752549163. I restarted the server (in daemon mode), but it halted. The content of paster.log instructed me to run sh ./scripts/migrate_tools/0010_tools.sh I did that. That script encountered an error: The following error occurred from the InstallManager while installing tool dependency bioc_qvalue : Error installing tool dependency package bioc_qvalue version 1.34.0: Unable to locate required tool shed repository named package_bioc_qvalue_1_34_0 owned by devteam with revision 11735242a19e.
How do I get around this problem?
I checked the mailing lists for anyone reporting a problem with "bioc_qvalue" or "11735242a19e" but nothing was turned up.
Tony Kusalik
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