Thanks Peter! That would be great! Let me know when you want me to test it :)
Cheers,
Liisa

Liisa Koski
Bioinformatics Programmer

Phone: 450-358-2621 x104, E-Mail: liisa.koski@dnalandmarks.ca
Postal Address: DNA LandMarks Inc, St-jean-sur-Richelieu, J3B 6X3 Québec CANADA

DNA LandMarks - une compagnie de BASF Plant Science / a BASF Plant Science company

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From: Peter Cock <p.j.a.cock@googlemail.com>
To: Liisa Koski <liisa.koski@dnalandmarks.ca>
Cc: galaxy-dev <galaxy-dev@bx.psu.edu>
Date: 2011-12-09 11:55
Subject: Re: [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized




On Fri, Dec 9, 2011 at 4:49 PM, Liisa Koski <liisa.koski@dnalandmarks.ca> wrote:
> Hi ,
> Looks like the tool Divide FASTQ file into paired and unpaired reads is not
> recognizing my paired-end naming suffix
>
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 1:N:0:TGNCCA
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 2:N:0:TGNCCA
>
> Is there a patch for this or another tool/way I can divide this fastq file?
>
> Thanks in advance,
> Liisa

That's a new Illumina FASTQ file isn't it, where they went and changed
the read naming? That annoyed quite a few people...

Presumably you're talking about my tool of that name on the Galaxy
Tool Shed? I can take a look at this now if you agree to test it ;)

Peter