Dear Jermy,

Thanks for the Toolshed link,
I installed it in the galaxy and tried running it by choosing "build backend database using cuffdiff output" and added additional plot as Heatmap. The Job was run successfully but i could'nt view the HTML page.. it shows as "Galaxy - cummeRbund Output " 

below the filename i could see like"
format: html, database: hg19
[1] "heatmap failed: Error in sqliteExecStatement(con, statement, bind.data): RS-DBI driver: (error in statement: near \")\": syntax error)\n" "

The database created by cummeRbund is no way related to the initially created database "postgreSQL" ??

Your suggestions are very much Apperiacted...

Thank you
Sridhar

On Fri, Jul 12, 2013 at 6:29 PM, Jeremy Goecks <jeremy.goecks@emory.edu> wrote:
The toolshed has a wrapper for cummerbund:


On Jul 12, 2013, at 12:03 AM, sridhar srinivasan wrote:


Dear Developers,

Could you please tell me the possibilities of using the R package cummeRband for visualization of RNA-seq data in galaxy??


Thanks
Sridhar

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On Fri, Jul 12, 2013 at 6:29 PM, Jeremy Goecks <jeremy.goecks@emory.edu> wrote:
The toolshed has a wrapper for cummerbund:

http://toolshed.g2.bx.psu.edu/view/jjohnson/cummerbund

On Jul 12, 2013, at 12:03 AM, sridhar srinivasan wrote:


Dear Developers,

Could you please tell me the possibilities of using the R package cummeRband for visualization of RNA-seq data in galaxy??


Thanks
Sridhar

___________________________________________________________
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