20 May
2010
20 May
'10
12:59 a.m.
Can anyone shed any light on the following erro I get when trying to extract a workflow from my history? ⇝ TypeError: <galaxy.tools.parameters.basic.UnvalidatedValue object at 0xa5ca790> is not JSON serializable URL: http://localhost:8082/workflow/build_from_current_history Module weberror.evalexception.middleware:*364* in respond <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>app_iter *= * self*.*application*(*environ*,* detect_start_response*)* Module paste.debug.prints:*98* in __call__ <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>environ*,* self*.*app*)* Module paste.wsgilib:*539* in intercept_output <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>app_iter *= * application*(*environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__ <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__ <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*126* in __call__ <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>body *=* method*(* trans*,* ****kwargs *)* Module galaxy.web.controllers.workflow:*921* in build_from_current_history <http://localhost:8082/workflow/build_from_current_history#> view<http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>step*.* tool_inputs *=* tool*.*params_to_strings*(* param_values*,* trans*.*app *)* Module galaxy.tools:*1110* in params_to_strings <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>*return* params_to_strings*(* self*.*inputs*,* params*,* app *)* Module galaxy.tools.parameters:*80* in params_to_strings <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> >> <http://localhost:8082/workflow/build_from_current_history#>rval*[* key *]* *=* str*(* to_json_string*(* value *)* *)* Module simplejson:*182* in dumps <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*312* in encode <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*265* in _iterencode <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*235* in _iterencode_dict <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*265* in _iterencode <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*235* in _iterencode_dict <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*273* in _iterencode <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*279* in _iterencode_default <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> Module simplejson.encoder:*300* in default <http://localhost:8082/workflow/build_from_current_history#> view <http://localhost:8082/workflow/build_from_current_history#> *TypeError: <galaxy.tools.parameters.basic.UnvalidatedValue object at 0xa5ca790> is not JSON serializable* -- Dennis Gascoigne 0407 639 995 dennis.gascoigne@gmail.com