Hi Geert, thanks for your reply. Unfortunately it is not feasible for us to use a script outside Galaxy. As long as no official feature for Galaxy is released I will work on a script which will execute workflows via the API and add this script as a tool into Galaxy. Cheers, Sascha Original message: Hi, In case you?d be interested: we use a script that creates interlaced data of paired end data. We run this outside galaxy on groups of samples ordered in directories at once. We then import the interlaced data into galaxy, enabling batch workflow. The first step of the workflow is a deinterlacing of the datafiles. The script is available here: http://geertvandeweyer.zymichost.com/index.php?page=read&id=27 Best Regards, Geert On 07/18/2012 02:38 PM, Sascha Kastens wrote:
Hi Dev-Team,
are you planning or maybe working on an update which enables the
possiblilty to run workflows in batch mode with paired end data?
Cheers,
Sascha
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-- Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/pub/geert-vandeweyer/26/457/726