
Jan, In order to help track down this issue, could you provide the tool_dependencies.xml you're using? --Dave B. On Tue 24 Jun 2014 05:40:30 AM EDT, Jan Kanis wrote:
In a tool_dependency.xml file I want to install python package lxml in a virtual environment, as a tool I'm building needs it. The python lxml package requires the libxml2 tool dependency. I have added a set_environment_for_install action that refers to the libxml2 repository, but when python/pip tries to install lxml it fails, apparently because it can't find the required headers. This appears to be because the setup_virtualenv action does not include install environment variables.
It seems to me that install environment variables should be sourced for every following action that can do nontrivial things, not just shell commands.
Alternatively, am I trying to install lxml the wrong way, is there a better way? (I'm running on python 2.6)
Jan
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/