Which version of DESeq does this tool use?

Note that there are significant differences between DESeq 1.4 (the version
described in the paper) and 1.6.x (current release). The differences are
both in functionality and results.
Regards,

Chris

On 23/02/2012 02:27, "Greg Von Kuster" <greg@bx.psu.edu> wrote:

>Lisa,
>
>In case you aren't aware, you can set your user preferences for your
>account in the tool shed to receive an email message when a new
>repository's first upload occurs. This would keep you from having to
>check the tool shed. Go to User -> Preferences -> Manage
> your email alerts and you'll see the following setting.
>
>
>
>
>
>
>

>On Feb 22, 2012, at 8:50 PM, Liusong Yang wrote:
>
>> Hi Vipin,
>> That is a wonderful news and I am eager to see it in tool shed. I am
>> going to check tool shed frequently these days to get it asap.
>>
>> Thanks
>> Lisa
>>
>> On Wed, Feb 22, 2012 at 4:07 PM, Vipin TS <vipin.ts@gmail.com> wrote:
>>> Hi,
>>>
>>> We have the recent release version of DESeq at our Galaxy instance,
>>>
>>> http://galaxy.tuebingen.mpg.de/tool_runner?tool_id=deseq
>>>
>>> I will add the Galaxy wrapper for DESeq in community tool shed in few
>>>days.
>>>
>>> regards,
>>> --Vipin
>>>
>>>> Hi Lisa,
>>>>
>>>> I am going to send your question over to the galaxy-dev@bx.psu.edu
>>>>mailing
>>>> list so that the development community can offer feedback.
>>>>
>>>>
>http://wiki.g2.bx.psu.edu/Support#Starting_a_technical.2C_local.2BAC8-clou
>d_instance.2C_or_development_thread

><http://wiki.g2.bx.psu.edu/Support#Starting_a_technical.2C_local.2BAC8-clo
>ud_instance.2C_or_development_thread>

>>>>
>>>> Th galaxy-user list is primarily for tool/data usage on the Galaxy
>>>>public
>>>> server.
>>>> http://wiki.g2.bx.psu.edu/Mailing%20Lists
>>>>
>>>> Thanks,
>>>>
>>>> Jen
>>>> Galaxy team
>>>>
>>>>
>>>> -------- Original Message --------
>>>> Subject: [galaxy-user] R scripts for DESeq
>>>> Date: Tue, 21 Feb 2012 23:25:35 -0500
>>>> From: Liusong Yang <liusongyang2009@gmail.com>
>>>> To: galaxy-user@lists.bx.psu.edu
>>>>
>>>> Hello,
>>>>
>>>> I am planning to put DESeq into galaxy. I am a newcomer for both
>>>> Galaxy and R. I have already read all of the related discussion in
>>>> this group. I also noticed that there are r_wrapper.sh and DESeq.xml
>>>> added into galaxy recently under the path of tools.
>>>>
>>>> These lines are from r_wrapper.sh.
>>>>
>>>> ### Run R providing the R script in $1 as standard input and passing
>>>> ### the remaining arguments on the command line
>>>>
>>>>
>>>> I guess this means we need to give the DESeq R script to the wrapper
>>>> as standard input. My question is where or what is the DESeq R
>>>> scripts? I installed R and DESeq package, but I can not fund anything
>>>> like DESeq.R or something similar? I feel so confusing now. Any
>>>> comments or suggestions would be absolutely appreciated!
>>>>
>>>> Thanks
>>>>
>>>> Lisa
>>>> ___________________________________________________________
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>>>
>>
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