On Mon, Jan 30, 2012 at 12:50 PM, Nate Coraor <nate@bx.psu.edu> wrote:

On Jan 25, 2012, at 10:37 AM, Leandro Hermida wrote:

> Hello,
>
> In the latest galaxy-dist version when running the system cleanup commands in the documented order I get an error when running the purge_datasets.sh script:
>
> sh delete_userless_histories.sh
> sh purge_histories.sh
> sh purge_libraries.sh
> sh purge_folders.sh
> sh delete_datasets.sh
> sh purge_datasets.sh
> Traceback (most recent call last):
> File "./scripts/cleanup_datasets/cleanup_datasets.py", line 518, in <module>
> if __name__ == "__main__": main()
> File "./scripts/cleanup_datasets/cleanup_datasets.py", line 116, in main
> purge_datasets( app, cutoff_time, options.remove_from_disk, info_only = options.info_only, force_retry = options.force_retry )
> File "./scripts/cleanup_datasets/cleanup_datasets.py", line 353, in purge_datasets
> _purge_dataset( app, dataset, remove_from_disk, info_only = info_only )
> File "./scripts/cleanup_datasets/cleanup_datasets.py", line 478, in _purge_dataset
> print "Error attempting to purge data file: ", dataset.file_name, " error: ", str( exc )
> File "/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/model/__init__.py", line 651, in get_file_name
> assert self.object_store is not None, "Object Store has not been initialized for dataset %s" % self.id

> AssertionError: Object Store has not been initialized for dataset 58
>
> What could be going wrong?

Hi Leandro,

This is a bug that cropped up when we added the object store backend to Galaxy. I'm working on a fix which should be available in the next release of Galaxy. Sorry for the inconvenience.

Thanks,
--nate

>
> regards,
> Leandro
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