My installation of the fastx toolkit seems to be having quite a few problems.  I can run the groomer on my data, although it seems to remove a lot more data than expected.  I often end up with empty files.  More concerning right now is the attempt to calculate quality statistics.  These never work for me, although I&#39;ve been able to get it to work on the main PSU galaxy instance with the same data.  Command line usage fails with the same error:<div>

<br></div><div><span class="Apple-style-span" style="font-family: verdana, arial, helvetica, clean, sans-serif; font-size: 12px; color: rgb(48, 48, 48); font-style: italic; line-height: 14px; ">fastx_quality_stats: Invalid quality score value (char &#39;%&#39; ord 37 quality value -27) on line 4</span></div>

<div><font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i><br></i></span></font></div><div>

<font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i>The error may be misleading, but its all I can gather from any out put right now.  It may be more appropriate to ask this to someone in the FASTX community, but figured I&#39;d shoot here as well, in case this has come up before. </i></span></font></div>

<div><font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i><br></i></span></font></div><div>

<font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i>Thanks!</i></span></font></div><div>

<font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i><br></i></span></font></div><div><font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i>Juan Perin</i></span></font></div>

<div><font class="Apple-style-span" color="#303030" face="verdana, arial, helvetica, clean, sans-serif" size="3"><span class="Apple-style-span" style="font-size: 12px; line-height: 14px;"><i><br></i></span></font></div>