On Feb 19, 2014, at 4:41 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:

Hi Greg,

Overnight this has gone back to the previously observed missing
data problem (e.g. email of 4th Feb) - no test results at all:
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler

Test runs
2014-02-18 16:15:52
Automated test environment
Time tested: 2014-02-18 16:15:52
System:
Architecture:
Python version:
Galaxy revision:
Galaxy database version:
Tool shed revision: 12485:64e6873c8825
Tool shed database version: 22
Tool shed mercurial version: 2.2.3
Tools missing tests or test data
Tool id: mira_4_0_mapping
Tool version: 0.0.2
Tool guid: testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_mapping/0.0.2
Missing components:
Functional test definitions missing for mira_4_0_mapping.

i.e. No test successes or failures reported. Collapsing the sections a bit:

Test runs
* 2014-02-18 16:15:52
  *Automated test environment

This was on Firefox (logged in, or logged out of the Tool Shed).
Oddly, switching to Safari (not logged into the Tool Shed) on the
same machine, or Chrome on a second machine, I also see an
older test run's information where there is test output:

Test runs
* 2014-02-18 16:15:52
   *Automated test environment
  * Tools missing tests or test data
* 2014-02-18 03:40:12
  * Automated test environment
  * Tests that failed
  * Tools missing tests or test data
  * Successful installation

Might some strange cache or Firefox issue be hiding data?

Your above email arrived in my inbox at 4:42 AM EST, and it looks like your repository in question was not yet tested. Using Firefox, I see the following resutls for today's test run, the results of which were updated in your Tool Shed repository at 4:50 AM EST. The nightly Install and Test Framework is finishing at about 8:00 AM EST for hte Test Tool Shed. The runs finish for the Main Tool Shed at about 5:00 AM EST.

Test runs

2014-02-19 04:50:21

Automated test environment

Time tested: 2014-02-19 04:50:21

System: Linux 3.8.0-30-generic

Architecture: x86_64

Python version: 2.7.4

Galaxy revision: 12536:c85f8fb5d63e

Galaxy database version: 118

Tool shed revision: 12485:64e6873c8825

Tool shed database version: 22

Tool shed mercurial version: 2.2.3

Tests that failed

Tool id: mira_4_0_bait

Tool version: mira_4_0_bait

Test: test_tool_000000 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_bait/0.0.1)

Stderr:
Fatal error: Exit code 1 ()
Missing mirabait under $MIRA4, '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mirabait'
Folder contained: env.sh

Traceback:
Traceback (most recent call last):
  File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", line 106, in test_tool
    self.do_it( td )
  File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", line 34, in do_it
    self._verify_outputs( testdef, test_history, shed_tool_id, data_list, galaxy_interactor )
  File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", line 67, in _verify_outputs
    galaxy_interactor.verify_output( history, output_data, outfile, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
  File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", line 312, in verify_output
    self.twill_test_case.verify_dataset_correctness( outfile, hid=hid, attributes=attributes, shed_tool_id=shed_tool_id, maxseconds=maxseconds )
  File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py", line 827, in verify_dataset_correctness
    self._assert_dataset_state( elem, 'ok' )
  File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py", line 641, in _assert_dataset_state
    raise AssertionError( errmsg )
AssertionError: Expecting dataset state 'ok', but state is 'error'. Dataset blurb: error

Tool id: mira_4_0_bait

Tool version: mira_4_0_bait

Test: test_tool_000001 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_bait/0.0.1)

Stderr:
Fatal error: Exit code 1 ()
Missing mirabait under $MIRA4, '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mirabait'
Folder contained: env.sh

Tool id: mira_4_0_bait

Tool version: mira_4_0_bait

Test: test_tool_000002 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_bait/0.0.1)

Stderr:
Fatal error: Exit code 1 ()
Missing mirabait under $MIRA4, '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mirabait'
Folder contained: env.sh

Tool id: mira_4_0_de_novo

Tool version: mira_4_0_de_novo

Test: test_tool_000000 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_de_novo/0.0.2)

Stderr:
Fatal error: Exit code 1 ()
Missing mira under $MIRA4, '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mira'
Folder contained: env.sh

Tools missing tests or test data

Tool id: mira_4_0_mapping

Tool version: 0.0.2

Tool guid: testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_mapping/0.0.2

Missing components:
Functional test definitions missing for mira_4_0_mapping.

Successful installations

Repository dependencies - installation of these additional repositories is required

Tool shed	Name	Owner	Changeset revision
testtoolshed.g2.bx.psu.edu	package_samtools_0_1_19	iuc	54195f1d4b0f

Tool dependencies

Type	Name	Version
MIRA	package	4.0
Installation directory
/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40

Type	Name	Version
samtools	package	0.1.19
Installation directory
/ToolDepsTest/samtools/0.1.19/peterjc/mira4_assembler/133b863a8a40

Thanks,

Peter
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