To follow up...

My data file had a build key assigned to it:

Tool: BAM to BigWig
Name:	BAM to BigWig on data 31
Created:	Jan 04, 2013
Filesize:	39.9 MB
Dbkey:	hg19-decoy
Format:	bigwig
Tool Version:
Tool Standard Output:	stdout
Tool Standard Error:	stderr
Tool Exit Code:	0
Full Path:	/mnt/ngs/analysis/svcgalaxy/DATA/files/002/dataset_2166.dat

and my build.txt file has that build listed:

#Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn

?       unspecified (?)

hg19-decoy      Human hg19 + Decoy (BROAD; [0-9XYMT]*) (hg19-decoy)

hg19-broad      Human hg19 (BROAD; [0-9XYMT]*) (hg19-broad)

hg19    Human hg19 (UCSC; chr[0-9XYM]*) (hg19)

On Jan 03, 2013, at 04:48 PM, Anthonius deBoer <thondeboer@me.com> wrote:

Got this when trying CIRCSTER on latest galaxy-dist.

Does this mean my system does not know about certain genomes?a

Trackster works fine...

Thon

Error Traceback:

View as:   Interactive  |  Text  |  XML (full)

⇝ TypeError: argument of type 'NoneType' is not iterable

URL: http://srv151/visualization/circster?dataset_id=241d84796a24640a&hda_ldda=hda

Module weberror.evalexception.middleware:364 in respond          view
>>  app_iter = self.application(environ, detect_start_response)

Module paste.debug.prints:98 in __call__          view
>>  environ, self.app)

Module paste.wsgilib:539 in intercept_output          view
>>  app_iter = application(environ, replacement_start_response)

Module paste.recursive:80 in __call__          view
>>  return self.application(environ, start_response)

Module galaxy.web.framework.middleware.remoteuser:91 in __call__          view
>>  return self.app( environ, start_response )

Module paste.httpexceptions:632 in __call__          view
>>  return self.application(environ, start_response)

Module galaxy.web.framework.base:160 in __call__          view
>>  body = method( trans, **kwargs )

Module galaxy.webapps.galaxy.controllers.visualization:748 in circster          view
>>  chroms_info = self.app.genomes.chroms( trans, dbkey=dbkey )

Module galaxy.visualization.genomes:210 in chroms          view
>>  dbkey_owner, dbkey = decode_dbkey( dbkey )

Module galaxy.visualization.genomes:24 in decode_dbkey          view
>>  if ':' in dbkey:

TypeError: argument of type 'NoneType' is not iterable

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