To prevent user error in mixing genomes, would you be interested in a feature in which the unified genotyper choses the genome in a fashion similar to how samtools know which which genome to use?

<when value="cached">

        <param name="input1" type="data" format="sam" metadata_name="dbkey" label="SAM File to Convert">

           <validator type="unspecified_build" />

        <validator type="dataset_metadata_in_file" filename="sam_fa_indices.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." line_startswith="index" />

      </param>

    </when>

Ilya Chorny Ph.D.

Bioinformatics Scientist I

Illumina, Inc.

9885 Towne Centre Drive

San Diego, CA 92121

Work: 858.202.4582

Email: ichorny@illumina.com

Website: www.illumina.com