On Wed, Nov 24, 2010 at 2:14 PM, Peter <biopython@maubp.freeserve.co.uk> wrote:
Hi all,
I guess you are probably busy with the planned galaxy-dist release at the moment, but could someone take a look at these proposed changes to the FASTA to tabular and FASTQ to tabular scripts?
http://bitbucket.org/peterjc/galaxy-central/src/tabular
i.e. For FASTA to tabular:
http://bitbucket.org/peterjc/galaxy-central/changeset/181614e79ccb http://bitbucket.org/peterjc/galaxy-central/changeset/d2fd2defa692
then for FASTQ to tabular:
http://bitbucket.org/peterjc/galaxy-central/changeset/52d50566f4af http://bitbucket.org/peterjc/galaxy-central/changeset/8bf1e0b14e4b
I'm happy to make changes if you feel anything needs changing for integration.
This enhancement (or another workaround like my proposed FASTA filter by ID script) is something I need for some in-house workflows doing classification of proteins from FASTA files.
Thanks,
Peter
Hi again, Can anyone take a look at these proposed changes? I don't mind being told you don't want to use them for the official repository (I'll just maintain a local branch or make them into separate tools). Regards, Peter