I've successfully installed bx-python, and there are mountain of utility scripts. Which ones do you use for converting the quals.fa file to binned array format?
On Feb 1, 2011, at 2:50 PM, Guru Ananda wrote:Hi David,We download quality score files (qual.fa) from UCSC and convert them to binned array format using scripts from bx-python (https://bitbucket.org/james_taylor/bx-python/wiki/Home) to enable fast seek.If you interested in the particulars (which script etc.), please let me know and I can provide you with the details.Thanks,Guru.On Tue, Feb 1, 2011 at 1:23 PM, David Hoover <hooverdm@helix.nih.gov> wrote:
Where do the files in quality_scores.loc come from? Can they be downloaded from UCSC or somewhere else?
David Hoover
Helix Systems Staff
http://helix.nih.gov
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Graduate student, Bioinformatics and Genomics