Hi Sarah, which GTF file are you using? Please make sure every exon line has a transcript_id. Cheers, Bjoern Am 25.11.19 um 10:53 schrieb Sarah Maman:
?Hello,
Please could you help me to run this wrapper : RNA STAR Gapped-read mapper for RNA-seq data (Galaxy Version 2.7.2b)
without this error:
terminate called after throwing an instance of 'std::out_of_range' what(): basic_string::at /galaxydata/galaxy-prod/my_job_working_directory/000/282/282124/tool_script.sh: line 9: 48744 Aborted (core dumped) STAR --runThreadN ${GALAXY_SLOTS:-4}...
Even if I increase the number of genome bins for coordinate-sorting, output files are all empty and I read this stderr above.
Thanks in advance,
Sarah Maman
INRA | SIGENAE | GenPhySE | INRA Occitanie-Toulouse
Tél. : +33(0)5.61.28.57.08
Télétravail lundi / vendredi
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