Hi all,
I am trying to set up my own galaxy server (and I don't know much IT) and thought that I had my sge working properly, but when I try to load data -- via manage data libraries on the web interface, I get the following error:

/bin/sh: module: line 1: syntax error: unexpected end of file
/bin/sh: error importing function definition for `module'

This works if I do not use SGE. 

Anyone know what this error could mean??

Here are the 2 lines in universal_wsgi.ini that are used for SGE:

default_cluster_job_runner = drmaa://-V -v TMPDIR=/scratch/
job_config_file = job_conf.xml

Here is my job_conf.xml file:

<?xml version="1.0"?>
<job_conf>
  <plugins workers="4">
    <!-- "workers" is the number of threads for the runner's work queue.
         The default from <plugins> is used if not defined for a <plugin>.
      -->
    <plugin id="sge" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/>
  </plugins>
  <handlers default="handlers">
    <!-- Additional job handlers - the id should match the name of a
         [server:<id>] in universe_wsgi.ini.
      -->
    <handler id="main" tags="handlers"/>
  </handlers>
  <destinations default="sge_default">
    <!-- Destinations define details about remote resources and how jobs
         should be executed on those remote resources.
      -->
    <destination id="sge_default" runner="sge">
      <param id="nativeSpecification">-V</param>
    </destination>
    <!-- Define parameters that are native to the job runner plugin. -->
  </destinations>
</job_conf>


Thanks!
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Brandi Cantarel, PhD
Bioinformatics Research Scientist
Baylor Institute for Immunology Research
Baylor Health Care System
214-820-9064 (office)
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