[galaxy-dev] atlas version 3.10.2 installation error

18 Apr 2017

      Dear list,

again me :( stumbling from problem to problem ...

I got compilation errors when installing

package_atlas_3_10 Revision: 98c017ec230d

I tried with gcc 4x and 6x without success. Do I need the intel C 
compiler for this tool?

If I got earlier posts 
(http://dev.list.galaxyproject.org/atlas-3-10-IUC-error-tt4668236.html) 
correct a precompiled version should be used anyway?

I'm running galaxy on CentOS 6.8 (64bit) (running in a VirtualBox).

Best,
Matthias

Here is the output (which I guess is verbose output from configure):

/tmp/cctyMGAH.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
probe_OS.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
probe_asm.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
system(make IRun_GAS_x8632 args="-v 2" MYFLAGS="-DATL_OS_Linux" 2> 
/dev/null | fgrep SUCCESS)

ierr=256 in command='make IRun_GAS_x8632 args="-v 2" 
MYFLAGS="-DATL_OS_Linux" 2> /dev/null | fgrep SUCCESS'!

OUTPUT:
=======
system(make IRun_GAS_x8664 args="-v 2" MYFLAGS="-DATL_OS_Linux" 2> 
/dev/null | fgrep SUCCESS)
probe_vec.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'

ierr=256 in command='make IRun_VSX MYFLAGS='-DATL_OS_Linux 
-DATL_GAS_x8664' 2> /dev/null | fgrep SUCCESS'!

OUTPUT:
=======

ierr=256 in command='make IRun_AltiVec MYFLAGS='-DATL_OS_Linux 
-DATL_GAS_x8664' 2> /dev/null | fgrep SUCCESS'!

OUTPUT:
=======

ierr=256 in command='make IRun_AVXFMA4 MYFLAGS='-DATL_OS_Linux 
-DATL_GAS_x8664' 2> /dev/null | fgrep SUCCESS'!

OUTPUT:
=======

ierr=256 in command='make IRun_3DNow MYFLAGS='-DATL_OS_Linux 
-DATL_GAS_x8664' 2> /dev/null | fgrep SUCCESS'!

OUTPUT:
=======

ierr=256 in command='make IRun_NEON MYFLAGS='-DATL_OS_Linux 
-DATL_GAS_x8664' 2> /dev/null | fgrep SUCCESS'!

OUTPUT:
=======
probe_arch.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
/tmp/cc8hbxc1.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
ERROR: enum fam=3, chip=2, model=79, mach=0
make[3]: *** [atlas_run] Error 44
make[2]: *** [IRunArchInfo_x86] Error 2
/tmp/ccafA8Bi.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
ERROR: enum fam=3, chip=2, model=79, mach=0
make[3]: *** [atlas_run] Error 44
make[2]: *** [IRunArchInfo_x86] Error 2
ERROR: enum fam=3, chip=2, model=79, mach=0
make[3]: *** [atlas_run] Error 44
make[2]: *** [IRunArchInfo_x86] Error 2
cmnd='make IRun_comp args="-v 2 -o atlconf.txt -O 1 -A 39 -Si nof77 0 -V 
488  -Fa ic '-fPIC' -Fa sm '-fPIC' -Fa dm '-fPIC' -Fa sk '-fPIC' -Fa dk 
'-fPIC' -Fa xc '-fPIC' -Fa gc '-fPIC' -Fa if '-fPIC' -b 64"'
/tmp/cc8W8Itx.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
probe_comp.o: In function `ATL_tmpnam':
/gpfs1/data/galaxy_server/galaxy-dev/database/tmp/tmp-toolshed-mtdAAKCLe/ATLAS/build/..//CONFIG/include/atlas_sys.h:224: 
warning: the use of `tmpnam' is dangerous, better use `mkstemp'

ierr=256 in command='find /gpfs1/data/galaxy_server/galaxy-dev/.venv/bin 
/usr/local/gcc/6.2.0-1/bin 
/global/apps/bioinf/galaxy/bin/Python-2.7.13/bin 
/usr/local/sqlite/3.15.1-1/bin 
/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/bin 
/usr/local/git/2.10.1-1/bin /usr/local/pcre/8.38-1/bin 
/usr/local/ncurses/5.9-1/bin /usr/local/bzip2/1.0.6-3/bin 
/usr/local/expat/2.1.1-1/bin /usr/local/curl/7.41.0-1/bin 
/usr/local/openssl/1.0.2-1/usr/bin /usr/local/uge/8.4.4-1/bin/lx-amd64 
/usr/local/bin /bin /usr/bin /usr/local/sbin /usr/sbin /sbin 
/home/songalax/bin -maxdepth 1 -name '*gcc*' -exec ./xisgcc '{}' \;'!

OUTPUT:
=======
cmnd=make IRunCComp CC='/usr/local/gcc/6.2.0-1/bin/gcc' CCFLAGS='-O'  | 
fgrep SUCCESS
    /usr/local/gcc/6.2.0-1/bin/gcc -O : SUCCESS!
cmnd=make IRunCComp CC='/usr/bin/gcc' CCFLAGS='-O'  | fgrep SUCCESS
    /usr/bin/gcc -O : SUCCESS!
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 1: syntax error: unexpected end of file

ierr=256 in command='find $HOME/local -name '*gcc*' -exec ./xisgcc '{}' \;'!

OUTPUT:
=======
cmnd=make IRunCComp CC='/usr/bin/gcc' CCFLAGS='-O'  | fgrep SUCCESS
    /usr/bin/gcc -O : SUCCESS!
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 1: syntax error: unexpected end of file

ierr=256 in command='find /usr/local /bin /sbin /usr/bin /usr/sbin 
/opt/bin /opt/sbin -name '*gcc*' -exec ./xisgcc '{}' \;'!

OUTPUT:
=======
cmnd=make IRunCComp CC='/usr/bin/gcc' CCFLAGS='-O'  | fgrep SUCCESS
    /usr/bin/gcc -O : SUCCESS!
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 1: syntax error: unexpected end of file
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 1: syntax error: unexpected end of file

Compiler nodes: Fresh Read
   0. priority=0, comps,OS,arch[0]=(128,1,1), comp='f77'
      '-O'
   1. priority=4, comps,OS,arch[0]=(128,1,1), comp='g77'
      '-O'
   2. priority=5, comps,OS,arch[0]=(128,1,1), comp='gfortran'
      '-O'
   3. priority=5, comps,OS,arch[0]=(127,1,1), comp='gcc'
      '-O -fomit-frame-pointer'
   4. priority=1000, comps,OS,arch[0]=(128,1,0), comp='gfortran'
      '-mcpu=cortex-a8 -mfpu=vfpv3 -mfloat-abi=softfp -O'
   5. priority=1000, comps,OS,arch[0]=(20,1,0), comp='gcc'
      '-O1 -mcpu=cortex-a8 -mtune=cortex-a8 -mfpu=vfpv3 
-mfloat-abi=softfp -fno-schedule-insns2'
   6. priority=1000, comps,OS,arch[0]=(75,1,0), comp='gcc'
      '-O1 -mcpu=cortex-a8 -mtune=cortex-a8 -mfpu=vfpv3 
-mfloat-abi=softfp -fno-expensive-optimizations'
   7. priority=1000, comps,OS,arch[0]=(32,1,0), comp='gcc'
      '-mcpu=cortex-a8 -O1 -mfpu=vfpv3 -mfloat-abi=softfp '
   8. priority=0, comps,OS,arch[0]=(63,768,1075838976), comp='icl'
      '-QxN -O3 -Qprec -fp:extended -fp:except -nologo -Oy'
   9. priority=0, comps,OS,arch[0]=(128,768,1), comp='ifort'
      '-O2 -fltconsistency -nologo'
  10. priority=0, comps,OS,arch[0]=(63,768,1), comp='cl'
      '-Oy -Ox -arch:SSE2 -nologo'
  11. priority=4, comps,OS,arch[0]=(63,768,1048576), comp='cl'
      '-Oy -Ox -arch:SSE -nologo'
  12. priority=4, comps,OS,arch[0]=(63,768,983040), comp='cl'
      '-Oy -Ox'
  13. priority=500, comps,OS,arch[0]=(127,1,3584), comp='gcc'
      '-O3 -funroll-loops'
  14. priority=500, comps,OS,arch[0]=(128,1,3584), comp='gfortran'
      '-O3 -funroll-loops'
  15. priority=600, comps,OS,arch[0]=(128,1,2048), comp='gfortran'
      '-march=z9-109 -O3 -funroll-loops'
  16. priority=600, comps,OS,arch[0]=(127,1,2048), comp='gcc'
      '-march=z9-109 -O3 -funroll-loops'
  17. priority=800, comps,OS,arch[0]=(128,1,2048), comp='gfortran'
      '-march=z10 -O3 -funroll-loops -fno-prefetch-loop-arrays'
  18. priority=800, comps,OS,arch[0]=(127,1,2048), comp='gcc'
      '-march=z10 -O3 -funroll-loops -fno-prefetch-loop-arrays'
  19. priority=1000, comps,OS,arch[0]=(127,1,2048), comp='gcc'
      '-march=z196 -O3 -funroll-loops -fno-prefetch-loop-arrays'
  20. priority=1000, comps,OS,arch[0]=(128,1,2048), comp='gfortran'
      '-march=z196 -O3 -funroll-loops -fno-prefetch-loop-arrays'
  21. priority=600, comps,OS,arch[0]=(127,1,1024), comp='gcc'
      '-march=z9-109 -O3 -funroll-loops -fno-prefetch-loop-arrays'
  22. priority=600, comps,OS,arch[0]=(128,1,1024), comp='gfortran'
      '-march=z9-109 -O3 -funroll-loops'
  23. priority=1000, comps,OS,arch[0]=(127,1,1024), comp='gcc'
      '-march=z10 -O3 -funroll-loops -fno-prefetch-loop-arrays'
  24. priority=1000, comps,OS,arch[0]=(127,1,512), comp='gcc'
      '-march=z9-109 -O3 -funroll-loops'
  25. priority=1010, comps,OS,arch[0]=(128,1,4), comp='xlf'
      '-qtune=pwr4 -qarch=pwr4 -O3 -qmaxmem=-1 -qfloat=hsflt'
  26. priority=1010, comps,OS,arch[0]=(127,1,4), comp='gcc'
      '-mcpu=power4 -mtune=power4 -O3 -fno-schedule-insns 
-fno-rerun-loop-opt'
  27. priority=1010, comps,OS,arch[0]=(128,1,8), comp='xlf'
      '-qtune=pwr5 -qarch=pwr5 -O3 -qmaxmem=-1 -qfloat=hsflt'
  28. priority=1010, comps,OS,arch[0]=(128,1,128), comp='xlf'
      '-qtune=pwr7 -qarch=pwr7 -O3 -qmaxmem=-1 -qfloat=hsflt'
  29. priority=1010, comps,OS,arch[0]=(128,1,8), comp='gfortran'
      '-mcpu=power5 -mtune=power5 -O3 -fno-schedule-insns 
-fno-rerun-loop-opt'
  30. priority=1010, comps,OS,arch[0]=(128,1,64), comp='gfortran'
      '-mcpu=power6 -mtune=power6 -maltivec -O3 -fno-schedule-insns 
-fschedule-insns2 -minsert-sched-nops=2'
  31. priority=1010, comps,OS,arch[0]=(127,1,8), comp='gcc'
      '-mcpu=power5 -mtune=power5 -O3 -fno-schedule-insns 
-fno-rerun-loop-opt'
  32. priority=1010, comps,OS,arch[0]=(127,1,64), comp='gcc'
      '-mcpu=power6 -mtune=power6 -maltivec -O3 -fno-schedule-insns 
-fschedule-insns2 -minsert-sched-nops=2'
  33. priority=1010, comps,OS,arch[0]=(128,1,128), comp='gfortran'
      '-O2 -mvsx -mcpu=power7 -mtune=power7 -m64 -mvrsave 
-funroll-all-loops'
  34. priority=1010, comps,OS,arch[0]=(127,1,128), comp='gcc'
      '-O2 -mvsx -mcpu=power7 -mtune=power7 -m64 -mvrsave 
-funroll-all-loops'
  35. priority=1000, comps,OS,arch[0]=(8,1,32), comp='gcc'
      '-mpowerpc64 -maltivec -mabi=altivec -mcpu=970 -mtune=970 -O2 
-mvrsave'
  36. priority=1000, comps,OS,arch[0]=(117,1,32), comp='gcc'
      '-mpowerpc64 -maltivec -mabi=altivec -mcpu=970 -mtune=970 -O2'
  37. priority=1000, comps,OS,arch[0]=(2,1,32), comp='gcc'
      '-Os -mpowerpc64 -maltivec -mabi=altivec -mcpu=970 -mtune=970 
-mvrsave -fno-schedule-insns2 -fno-schedule-insns'
  38. priority=1000, comps,OS,arch[0]=(121,1,16), comp='gcc'
      '-O3 -maltivec -mabi=altivec -mcpu=7400 -mtune=7400 
-fno-schedule-insns -fschedule-insns2'
  39. priority=1000, comps,OS,arch[0]=(2,1,16), comp='gcc'
      '-Os -maltivec -mabi=altivec -mcpu=7400 -mtune=7400'
  40. priority=1000, comps,OS,arch[0]=(4,1,16), comp='gcc'
      '-Os -maltivec -mabi=altivec -mcpu=7400 -mtune=7400'
  41. priority=1, comps,OS,arch[0]=(33,1,0), comp='pathcc'
      '-march=auto -O2 -OPT:Olimit=15000 -LNO:blocking=OFF'
  42. priority=1, comps,OS,arch[0]=(6,1,0), comp='pathcc'
      '-O3 -OPT:Olimit=15000 -LNO:blocking=OFF -LOPT:alias=typed 
-march=auto -LNO:opt=0 -LNO:full_unroll_outer=OFF -LNO:fusion=0 
-LNO:prefetch=2'
  43. priority=1, comps,OS,arch[0]=(24,1,0), comp='pathcc'
      '-O3 -OPT:Olimit=15000 -LNO:blocking=OFF -LOPT:alias=typed 
-march=auto'
  44. priority=1000, comps,OS,arch[0]=(128,1,0), comp='pathf95'
      '-march=auto -O2'
  45. priority=500, comps,OS,arch[0]=(127,1,0), comp='gcc'
      '-O2 -mips64 -march=5kf -mtune=5kf -fno-schedule-insns 
-fschedule-insns2 -fno-peephole -fno-peephole2'
  46. priority=1000, comps,OS,arch[0]=(128,32,0), comp='f77'
      '-O2'
  47. priority=1000, comps,OS,arch[0]=(97,32,0), comp='cc'
      '-O2 -OPT:Olimit=15000 -LNO:blocking=OFF'
  48. priority=1000, comps,OS,arch[0]=(30,32,0), comp='cc'
      '-O3 -OPT:Olimit=15000 -LNO:blocking=OFF -LOPT:alias=typed'
  49. priority=1010, comps,OS,arch[0]=(128,1,0), comp='gfortran'
      '-fomit-frame-pointer -O2 -fno-tree-loop-optimize'
  50. priority=1000, comps,OS,arch[0]=(30,1,0), comp='gcc'
      '-fomit-frame-pointer -O2'
  51. priority=1010, comps,OS,arch[0]=(30,1,0), comp='gcc'
      '-fomit-frame-pointer -O2 -fno-tree-loop-optimize'
  52. priority=10, comps,OS,arch[0]=(128,1,0), comp='g77'
      '-O -mcpu=ultrasparc3 -mtune=ultrasparc3'
  53. priority=100, comps,OS,arch[0]=(128,1,0), comp='gfortran'
      '-O -mcpu=ultrasparc3 -mtune=ultrasparc3'
  54. priority=1000, comps,OS,arch[0]=(128,1,0), comp='f77'
      '-dalign -native -xO5'
  55. priority=1000, comps,OS,arch[0]=(96,1,0), comp='gcc'
      '-mcpu=ultrasparc3 -mtune=ultrasparc3 -O'
  56. priority=1000, comps,OS,arch[0]=(29,1,0), comp='gcc'
      '-O3 -mcpu=ultrasparc3 -mtune=ultrasparc3 -fno-schedule-insns2 
-fschedule-insns'
  57. priority=1000, comps,OS,arch[0]=(2,1,0), comp='gcc'
      '-O1 -mcpu=ultrasparc3 -mtune=ultrasparc3 -fschedule-insns 
-fmodulo-sched'
  58. priority=1000, comps,OS,arch[0]=(128,1,0), comp='gfortran'
      '-mcpu=niagara2 -mtune=niagara2 -Os'
  59. priority=1000, comps,OS,arch[0]=(127,1,0), comp='gcc'
      '-mcpu=niagara2 -mtune=niagara2 -Os'
  60. priority=1000, comps,OS,arch[0]=(95,1,0), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -mfma4 -O2 -fno-tree-loop-optimize'
  61. priority=1000, comps,OS,arch[0]=(95,1,0), comp='gcc'
      '-Os -fomit-frame-pointer'
  62. priority=1005, comps,OS,arch[0]=(95,896,0), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  63. priority=1000, comps,OS,arch[0]=(95,1,0), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  64. priority=1000, comps,OS,arch[0]=(128,1,0), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  65. priority=1000, comps,OS,arch[0]=(95,1,12582912), comp='gcc'
      '-fomit-frame-pointer -O3 -mfpmath=387'
  66. priority=1005, comps,OS,arch[0]=(31,896,12582912), comp='gcc-4'
      '-fomit-frame-pointer -O3 -mfpmath=387'
  67. priority=1000, comps,OS,arch[0]=(95,1,-1071906816), comp='gcc'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  68. priority=1005, comps,OS,arch[0]=(31,896,1835008), comp='gcc-4'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  69. priority=1000, comps,OS,arch[0]=(128,1,1835008), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  70. priority=1000, comps,OS,arch[0]=(95,1,0), comp='gcc'
      '-fomit-frame-pointer -mfpmath=387 -O2'
  71. priority=1005, comps,OS,arch[0]=(31,896,0), comp='gcc-4'
      '-fomit-frame-pointer -mfpmath=387 -O2'
  72. priority=1000, comps,OS,arch[0]=(128,1,0), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=387 -O2'
  73. priority=1000, comps,OS,arch[0]=(25,1,-1073741824), comp='gcc-4'
      '-O2 -fomit-frame-pointer -mfpmath=sse'
  74. priority=1005, comps,OS,arch[0]=(6,896,-1073741824), comp='gcc-4'
      '-O2 -fomit-frame-pointer -mfpmath=sse -fno-schedule-insns 
-fno-optimize-register-move'
  75. priority=1000, comps,OS,arch[0]=(6,1,-1073741824), comp='gcc'
      '-O2 -fomit-frame-pointer -mfpmath=sse -fno-schedule-insns 
-fno-optimize-register-move'
  76. priority=1000, comps,OS,arch[0]=(25,1,-2147483648), comp='gcc'
      '-O2 -fomit-frame-pointer -mfpmath=sse'
  77. priority=1000, comps,OS,arch[0]=(128,1,-1073741824), comp='gfortran'
      '-O2 -fomit-frame-pointer -mfpmath=sse'
  78. priority=1000, comps,OS,arch[0]=(128,1,32768), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  79. priority=1000, comps,OS,arch[0]=(95,1,32768), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  80. priority=1000, comps,OS,arch[0]=(128,1,16384), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  81. priority=1000, comps,OS,arch[0]=(95,1,16384), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  82. priority=1000, comps,OS,arch[0]=(128,1,8192), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  83. priority=1000, comps,OS,arch[0]=(10,1,8192), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  84. priority=1000, comps,OS,arch[0]=(85,1,8192), comp='gcc'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  85. priority=1000, comps,OS,arch[0]=(128,1,12288), comp='gfortran'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  86. priority=1000, comps,OS,arch[0]=(95,1,4096), comp='gcc'
      '-fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4'
  87. priority=1000, comps,OS,arch[0]=(65,1,536870912), comp='gcc'
      '-O'
  88. priority=1000, comps,OS,arch[0]=(30,1,536870912), comp='gcc'
      '-O3 -fno-schedule-insns2 -funroll-all-loops -fno-tree-ch'
  89. priority=1000, comps,OS,arch[0]=(95,1,33554432), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  90. priority=1005, comps,OS,arch[0]=(31,896,33554432), comp='gcc-4'
      '-fomit-frame-pointer -mfpmath=sse -O2'
  91. priority=1000, comps,OS,arch[0]=(95,1,67108864), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2 -fno-schedule-insns2'
  92. priority=1005, comps,OS,arch[0]=(95,896,67108864), comp='gcc-4'
      '-fomit-frame-pointer -mfpmath=sse -O2 -fno-schedule-insns2'
  93. priority=50, comps,OS,arch[0]=(57,1,134217728), comp='clang'
      '-fomit-frame-pointer -mavx -O2 -m64 -Wno-parentheses'
  94. priority=1000, comps,OS,arch[0]=(127,1,134217728), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2 -fno-schedule-insns2'
  95. priority=1005, comps,OS,arch[0]=(31,896,134217728), comp='gcc-4'
      '-fomit-frame-pointer -mfpmath=sse -O2 -fno-schedule-insns2'
  96. priority=1000, comps,OS,arch[0]=(127,1,268435456), comp='gcc'
      '-fomit-frame-pointer -mfpmath=sse -O2'

Compiler nodes: Targeted
   0. priority=0, comps,OS,arch[0]=(128,1,1), comp='f77'
      '-O'
   1. priority=4, comps,OS,arch[0]=(128,1,1), comp='g77'
      '-O'
   2. priority=5, comps,OS,arch[0]=(128,1,1), comp='gfortran'
      '-O'
   3. priority=5, comps,OS,arch[0]=(127,1,1), comp='gcc'
      '-O -fomit-frame-pointer'

Compiler nodes: Sorted
   0. priority=0, comps,OS,arch[0]=(128,1,1), comp='f77'
      '-O'
   1. priority=4, comps,OS,arch[0]=(128,1,1), comp='g77'
      '-O'
   2. priority=5, comps,OS,arch[0]=(127,1,1), comp='gcc'
      '-O -fomit-frame-pointer'
   3. priority=5, comps,OS,arch[0]=(128,1,1), comp='gfortran'
      '-O'

cc1: error: unrecognized command line option "-mavx2"
make[2]: *** [IRunCComp] Error 1

ierr=256 in command='make IRunCComp CC='/usr/bin/gcc' CCFLAGS='-O 
-fomit-frame-pointer -mavx2 -mfma -fPIC -m64'  | fgrep SUCCESS'!

OUTPUT:
=======
cmnd=make IRunCComp CC='/usr/bin/gcc' CCFLAGS='-O -fomit-frame-pointer 
-mavx2 -mfma -fPIC -m64'  | fgrep SUCCESS
    /usr/bin/gcc -O -fomit-frame-pointer -mavx2 -mfma -fPIC -m64 : FAILURE!

Unable to find usable compiler for ICC; abortingMake sure compilers are 
in your path, and specify good compilers to configure
(see INSTALL.txt or 'configure --help' for details)make[1]: *** 
[atlas_run] Error 1
make: *** [IRun_comp] Error 2
ERROR 512 IN SYSCMND: 'make IRun_comp args="-v 2 -o atlconf.txt -O 1 -A 
39 -Si nof77 0 -V 488  -Fa ic '-fPIC' -Fa sm '-fPIC' -Fa dm '-fPIC' -Fa 
sk '-fPIC' -Fa dk '-fPIC' -Fa xc '-fPIC' -Fa gc '-fPIC' -Fa if '-fPIC' 
-b 64"'
Make.top:1: Make.inc: No such file or directory
Make.top:329: warning: overriding commands for target `/AtlasTest'
Make.top:80: warning: ignoring old commands for target `/AtlasTest'
make[1]: *** No rule to make target `Make.inc'.  Stop.
make: *** [startup] Error 2
mv: cannot stat `lib/Makefile': No such file or directory
../configure: line 450: lib/Makefile: No such file or directory
../configure: line 451: lib/Makefile: No such file or directory
../configure: line 452: lib/Makefile: No such file or directory
../configure: line 453: lib/Makefile: No such file or directory
../configure: line 509: lib/Makefile: No such file or directory
Make.top:1: Make.inc: No such file or directory
Make.top:329: warning: overriding commands for target `/AtlasTest'
Make.top:80: warning: ignoring old commands for target `/AtlasTest'
make[1]: *** No rule to make target `Make.inc'.  Stop.
make: *** [build] Error 2
-- 

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt@ufz.de, www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: 
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------