Hi Shaun,

Please download hg19.2bit file from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/, and update your tool-data/alignseq.loc file with the following line:
seq  hg19  PATH_TO_hg19.2bit (tab-separated fields)
This will then let the 'fetch sequences' tool to access hg19 sequences.

Thanks for using Galaxy,
Guru
Galaxy team.





From: SHAUN WEBB <swebb1@staffmail.ed.ac.uk>
Date: January 27, 2010 9:50:23 AM EST
To: galaxy-dev@bx.psu.edu
Subject: [galaxy-dev] Storing Genomic Sequences


Hi, we would like to store the new hg19 sequence locally for use with galaxy tools (e.g Fetch Genomic Sequence). I was wondering which files were required to this and where they are located.

Thanks
Shaun Webb

-- 
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.


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