Dear all,

I would like to use our built-in color-spaces indexes for BWA with Galaxy but I failed to do it.

I added the following line in the "bwa_index_color.loc" file of the "tool-data" directory :

hg19 hg19 hg19 my_path_to/hg19.fa

but I don't see the reference hg19 appeared onto the browser... ("Map with BWA for SOLiD")

Maybe I missed something here because there is a note about the original path for hg19 for workflow backwards compatibility (?), but I don't understand what it means..

For the BFAST indexes, It is OK.

Thank you for your help

Bruno

-- 

Bruno Zeitouni, PhD
Institut Curie - U900 INSERM - Mines ParisTech
Equipe Bioinformatique
Bâtiment de Biologie du Développement
26 rue d'ULM
75248 Paris Cedex 05 - FRANCE

Tél  : +33 1 56 24 69 31
Mail : bruno.zeitouni@curie.fr