Hi Björn, yes, this was the problem - I had wrong GID there. Now it works! Thanks! Jan 2013/4/8 Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de>
Hi Jan,
you have that line in your config file, right?
SQLNamedQuery LookupGalaxyUser SELECT "email,password,'1003','1003','/media/data/galaxy_ftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"
1003 is the group ID of your galaxyuser. Try to adjust that number to your ID.
Hope that will work! Bjoern
I am new to Galaxy. I have managed to set up my Galaxy server with PostgreSQL and ProFTPd. I only do not know how to configure the system properly in order to get uploaded files into Galaxy.
Problems: 1. I cannot see the files uploaded through ProFTPd from Galaxy. 2. I cannot upload any (even tiny) file through the Galaxy web interface -- Galaxy puts the upload task in the queue and the arrow is blinking (like it is uploading) but it never ends.
Problem nr. 1 is solved when I set the current user's home directory access rights to 777. But it does not seem to be the best solution (and the ProFTPd config file shown in http://wiki.galaxyproject.org/Admin/Config/Upload%20via%20FTP is more restrictive than that).
I run Galaxy under UNIX user called galaxyuser. And I log into Galaxy as someone@somewhere.com. The access rights on the folders are as follows: drwx--x--x 3 galaxyuser root 4096 dub 5 12:05 /var/ftp_uploads/ /var/ftp_uploads/: total 4 drwx------ 2 65533 65533 4096 dub 8 15:38 someone@somewhere.com
I would appreciate any suggestions. Best regards,
Jan ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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-- Björn Grüning Albert-Ludwigs-Universität Freiburg Institute of Pharmaceutical Sciences Pharmaceutical Bioinformatics Hermann-Herder-Strasse 9 D-79104 Freiburg i. Br.
Tel.: +49 761 203-4872 Fax.: +49 761 203-97769 E-Mail: bjoern.gruening@pharmazie.uni-freiburg.de Web: http://www.pharmaceutical-bioinformatics.org/