Mira doesn’t work on Galaxy. This is the log message I receive.
Tool: Assemble with MIRA v3.4
Name: MIRA log
Created: Fri Aug 22 00:24:38 2014 (UTC)
Filesize: 0 bytes
Dbkey: ?
Format: txt
Galaxy Tool Version: 0.0.10
Tool Version: None
Tool Standard Output: stdout
Tool Standard Error: stderr
Tool Exit Code: None
API ID: d5f55b83db1f410a
Full Path: /mnt/galaxy/files/000/dataset_326.dat

Input Parameter Value Note for rerun
Assembly method De novo
Assembly type Genome
Assembly quality grade Accurate
Backbones/reference chromosomes? false
Sanger/Capillary reads? false
454 reads? false
Solexa/Illumina reads? false
Ion Torrent reads? true
Ion Torrent reads file 10: R_2011_10_19_14_30_56_user_SN1-36_Auto_SN1-36_38.fastq

Inheritance Chain

MIRA log

Also I can’t install Mira 4. This is the message I receive. Any suggestions.

Thanks.

Marija Tauschek

-- 

Dr Marija Tauschek/Atanaskovic

Robins-Browne Lab
Dept Microbiology & Immunology,
The University of Melbourne, 
at the Peter Doherty Institute for Infection and Immunity, 
Victoria 3010, Australia
Tel: +61 3 8344 9927
Email: matan@unimelb.edu.au

Internal Server Error

Galaxy was unable to successfully complete your request

URL: http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236
Module galaxy.web.framework.middleware.error:149 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request
>>  body = method( trans, **kwargs )
Module galaxy.web.framework:369 in decorator
>>  return func( self, trans, *args, **kwargs )
Module galaxy.webapps.galaxy.controllers.admin_toolshed:983 in prepare_for_install
>>  includes_tool_dependencies )
Module tool_shed.util.common_install_util:97 in get_dependencies_for_repository
>>  repository = suc.get_repository_for_dependency_relationship( trans.app, tool_shed_url, name, repository_owner, changeset_revision )
Module tool_shed.util.shed_util_common:1036 in get_repository_for_dependency_relationship
>>  ( name, owner, changeset_revision ) )
Module tool_shed.util.shed_util_common:1867 in url_join
>>  parts.append( arg.strip( '/' ) )
AttributeError: 'NoneType' object has no attribute 'strip'
extra data


full traceback

text version

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