I just tried to install khmer from the toolshed.

I don’t think it’s installing correctly  - but I don’t know if it’s a tool problem or something with my setup.

the tool-dep directory has 

khmer/2.0/crusoe/package_khmer_2_0/c7702a7d26e8/

but it’s empty.

This tool has a package dependency like this:

<?xml version="1.0"?>
<tool_dependency>
    <package name="khmer" version="2.0">
        <install version="1.0">
    <actions>
    <action type="setup_python_environment">
    <repository changeset_revision="5caf592bb259" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
<package name="python" version="2.7" />
</repository>
<package>https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz#md5=1f610abd021254e21b082179a100cd39</package>
</action>
            </actions>
        </install>
    </package>
</tool_dependency>

what does that fragment tag mean?

How does this work.

Do I have to set up something to deal with making a python environment?

It also uses this @BINARY@ variable that I have not seen before. galaxy search for ‘@BINARY@‘ turns up nothing.

Can anybody point me in the right direction here?

Thanks!

Brad