Hello Nikhil, On Aug 2, 2012, at 9:32 PM, Nikhil Joshi wrote:
Hi all,
We just upgraded our local galaxy to the latest version and now I am trying to get automatic tool installation to work properly. I changed the universe_wsgi.ini file to enable the toolshed xml file,
Regarding this, do you mean that you have something like the following setting? tool_config_files = tool_conf.xml,shed_tool_conf.xml
I created a "shed_tools" directory one above the galaxy install, and restarted galaxy. But when I try to install a repository, I get this error as a popup: "Initializing repository installation failed".
From what tool shed are you trying to install Galaxy? When this pop-up is displayed, the last line of your Galaxy paster log should be a url. If you paste that url into a browser it will display a page that displays the entire stack trace for the exception. We'll need to see this information in order to determine the cause of the problem.
I tried this with various repositories, but I get the same error. Then when I go to "Manage installed tool shed repositories", all of the repositories I tried to install are stuck in the "Cloning" state. Finally, if I try to uninstall any of them, I get this error, with a traceback:
AttributeError: 'NoneType' object has no attribute 'startswith'
Any ideas?
- Nik.
-- Nikhil Joshi Bioinformatics Analyst/Programmer UC Davis Bioinformatics Core http://bioinformatics.ucdavis.edu/ najoshi -at- ucdavis -dot- edu 530.752.2698 (w) ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: