I am guessing that the disk space on your Galaxy hosted machine is empty. Check df -h on your shell

HTH, Vipin


I just blew everything up, I have no idea why. Galaxy doesn't start anymore. When I run the run.sh script, it stops after loading the converters and just crashes. Here's the traceback:

Traceback (most recent call last):
 File "/home/galaxy/galaxy-dev/lib/galaxy/web/buildapp.py", line 82, in app_factory
   app = UniverseApplication( global_conf = global_conf, **kwargs )
 File "/home/galaxy/galaxy-dev/lib/galaxy/app.py", line 52, in __init__
   load_history_imp_exp_tools( self.toolbox )
 File "/home/galaxy/galaxy-dev/lib/galaxy/tools/imp_exp/__init__.py", line 34, in load_history_imp_exp_tools
   history_exp_tool = toolbox.load_tool( tmp_name.name )
 File "/home/galaxy/galaxy-dev/lib/galaxy/tools/__init__.py", line 131, in load_tool
   tree = util.parse_xml( config_file )
 File "/home/galaxy/galaxy-dev/lib/galaxy/util/__init__.py", line 104, in parse_xml
   tree = ElementTree.parse(fname)
 File "/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 859, in parse
   tree.parse(source, parser)
 File "/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 584, in parse
   self._root = parser.close()
 File "/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 1251, in close
   self._parser.Parse("", 1) # end of data
ExpatError: no element found: line 1, column 0
Exception IOError: (28, 'No space left on device') in <bound method _TemporaryFileWrapper.__del__ of <closed file '<fdopen>', mode 'w+b' at 0x8539a50>> ignored

Since the message is not really self-explanatory, I have no idea as to what's gone wrong. The only thing I know is that the file referred by tmp_name.name is empty. Do you have an idea where I should be looking?

I really can't relate that to anything I did recently, I just modified some parameter labels in two tools, which should be really harmless, and the display name of a reference genome, which shouldn't make any difference either.

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