On Wed, Jun 15, 2011 at 2:30 AM, Ka Ming Nip <kmnip@bcgsc.ca> wrote:
Hello,
I have been trying to set up Galaxy to run its jobs on my SGE cluster using the Unified Method, based on the steps described in the wiki:
https://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster
My local instance of Galaxy is installed under my home directory, but my cluster is on a different file system. I need to "ssh" to the head node before I can submit jobs.
Is there any way to set up Galaxy with a SGE cluster on a different file system?
I haven't looked into it in great detail, but we currently have a similar network setup, and would also like to link Galaxy to SGE. The main problem is the lack of a shared file system - in order to run a job on the cluster we (Galaxy) has to get the data onto the cluster, run the job, and get the results back. Peter