Hi Dannon, Thanks for getting back to me. Dataset hasn't been modified, I've just uploaded the files and gave it a go. Revision is 4084:a8ef6a46d622 (i'm using galaxy central. maybe i should give the galaxy-dist trunk a try?) Thanks! Marijn On 08/09/2010 02:45 PM, Dannon Baker wrote:
Marijn,
Are there any other actions on this first step? Has the input dataset been modified previously by a set datatype workflow action?
And, lastly, what revision are you working with? 'hg tip' will show this.
-Dannon
On Aug 9, 2010, at 4:58 AM, Marijn Vandevoorde wrote:
Hi all,
I'm setting up our own galaxy service here, but I've run into a rather basic problem: whenever my first step finishes, it just stops there. The second job in my history just keeps waiting forever and I really don't know why.
Here's the workflow:
input dataset -> FASTQ Groomer (until here ok) -> Map With BWA (together with a reference dataset of course).
And there it just stops. When I try to edit the BWA, it complains a bit about missing meta data:
Required metadata values are missing. Some of these values may not be editable by the user. Selecting "Auto-detect" will attempt to fix these values.
Adding a step action to change the datatype of the outputfile to fastqsanger doesn't help either.
Any ideas? Let me know if you need more info!
Thanks!
Marijn _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
-- Marijn Vandevoorde Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM marijn.vandevoorde@psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================