Hi One of our development boxes is (unfortunately) behind a different firewall, compared to the the other servers. We fixed the problem (ie "Get Data -> Upload File -> choose file. It is not uploading at all") by setting a proxy server. This could be done eg. by adding the following lines to "run.sh": http_proxy=http://******.fmi.ch:<port number> export http_proxy Obviously, this solved other problems as well, like "Get Data -> UCSC" Regards, Hans-Rudolf On 08/19/2013 04:01 PM, Yinan Wan wrote:
Hi Hans-Rudolf,
Thanks for your reply. But do you have any idea what might be related with this "proxy issue"? What is required to open/set for galaxy to run? Or do you might share your experience of how you solve the problem?
Thanks, Yinan
On Mon, Aug 19, 2013 at 3:16 AM, Hans-Rudolf Hotz <hrh@fmi.ch <mailto:hrh@fmi.ch>> wrote:
Hi Yinan
It might be unrelated, but we had a similar issue. The problem was due to the proxy settings of our server.
Regards, Hans-Rudolf
On 08/16/2013 08:23 PM, Yinan Wan wrote:
Hi,
I have installed galaxy on our local server, when I was trying to upload data from: Get Data -> Upload File -> choose file. It is not uploading at all; but it works fine when using the URL option. I wonder do you have any suggestions about this problem?
The output from the command line is pasted below: ====> 128.118.200.158 - - [15/Aug/2013:14:15:41 -0400] "GET /api/histories/__5969b1f7201f12ae/contents?ids=__f09437b8822035f7 HTTP/1.1" 200 - "http://128.118.201.68:8080/__history <http://128.118.201.68:8080/history>" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:15:45 -0400] "GET /api/histories/__5969b1f7201f12ae HTTP/1.1" 200 - "http://128.118.201.68:8080/__history <http://128.118.201.68:8080/history>" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:15:45 -0400] "GET /api/histories/__5969b1f7201f12ae/contents?ids=__f09437b8822035f7 HTTP/1.1" 200 - "http://128.118.201.68:8080/__history <http://128.118.201.68:8080/history>" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:15:45 -0400] "GET /api/users/current HTTP/1.1" 200 - "http://128.118.201.68:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:16:49 -0400] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://128.118.201.68:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:17:03 -0400] "POST /tool_runner/upload_async___create HTTP/1.1" 200 - "http://128.118.201.68:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:17:04 -0400] "GET /tool_runner/upload_async___message HTTP/1.1" 200 - "http://128.118.201.68:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" 128.118.200.158 - - [15/Aug/2013:14:17:08 -0400] "GET /history HTTP/1.1" 200 - "http://128.118.201.68:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36" ==============>
Thanks, Yinan
-- Yinan Wan, graduate student Bioinformatics and Genomics program Huck Institutes of Life Sciences the Pennsylvania State University
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-- Yinan Wan, graduate student Bioinformatics and Genomics program Huck Institutes of Life Sciences the Pennsylvania State University