Hi Curt, The development team has characterized the issue and a correction is pending. For now, the best work-around is to just ignore the error files. Thank you for reporting the problem! Best, Jen Galaxy team On 5/31/11 8:37 AM, Nate Coraor wrote:
Curt Palm wrote:
I've been configuring my local instance of galaxy to use trackster according to the instructions on https://bitbucket.org/galaxy/galaxy-central/wiki/Visualization when I run the script: python ./cron/build_chrom_db.py ./tool-data/shared/ucsc/chrom/
I get files that begin with:
<META http-equiv="Content-Script-Type" content="text/javascript"> chr1 247249719 chr1_random 166326 ...
this causes an error in the browser: "Could not load chroms for this dbkey:"
if i delete the first line "<META http-equiv="Content-Script-Type" content="text/javascript">" from the .len file, then trackster works fine.
I'm thinking there is a new line the input to build_chrom_db.py that is not getting stripped by this script
Hi Curt,
This appears to be a problem with the query that is being used for some of the builds. I'm looking in to it now and will let you know what I find out.
--nate
thanks,
Curt Palm
******************************************************* Curtis J. Palm cpalm@stanford.edu Stanford Genome Technology Center
MC: 8307 office: 650-812-1994 cell: 408 858-7849 *******************************************************
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support