Hi Nate, without a trailing slash it works. I created PR #339, that removes trailing slashes from tool IDs. Thanks! Bjoern
Hi Björn,
Please try it without the trailing slash on the tool ID.
--nate
On Wed, Feb 26, 2014 at 11:28 AM, Björn Grüning <bjoern.gruening@gmail.com>wrote:
Hi Nate,
sorry to bother you again, but that issue is still not fixed for me.
The following is supposed to work, or? <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ ncbi_blastn_wrapper/" destination="24_cores_24G" /> <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ ncbi_blastx_wrapper/" destination="24_cores_24G" /> <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ ncbi_tblastn_wrapper/" destination="24_cores_24G" /> <tool id="ncbi_blastp_wrapper" destination="24_cores_24G" /> <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ ncbi_rpsblast_wrapper/" destination="24_cores_24G" /> <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ ncbi_tblastx_wrapper/" destination="24_cores_24G" /> <tool id="toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/ blast2go/0.0.6" destination="20G_memory"/>
Thanks, Bjoern
Am 14.02.2014 16:37, schrieb Nate Coraor:
Hi Björn,
It should be fixed, the problem was with tools with uppercase characters in the guid:
https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/
--nate
On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning <bjoern.gruening@gmail.com
wrote:
Hi Nate & Simon,
was that solved? I think it's still not working? Or is that a regression. In particular shed_host/repos/owner/repo/tool_id is not working, and that is what is 90% needed, or?
Thanks, Bjoern
From: Nate Coraor [mailto:nate@bx.psu.edu]
This should work, it looks like there may be a bug with handling tool
shed
IDs when determining job destinations. You are actually supposed to be
able to use any of:
shed_host/repos/owner/repo/tool_id/version shed_host/repos/owner/repo/tool_id tool_id
I'll take a look at this as soon as possible. One thing you might try
in
the short term is using the percent encoded tool id in the <tool> tag
in
job_conf.xml:
Hi Nate,
Using the percent encoded form was the first thing I tried (before
emailing the list). It didn't make any difference. I think there's another reason it's not picking it up. Thanks for looking into this.
cheers, Simon
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