At some point, we need to rewrite all the existing rpy tools for rpy 2 but right now, rpy 1.03 is something of a necessary wart: [galaxy@q galaxy]$ grep rpy tools/*/*.py tools/metag_tools/short_reads_figure_high_quality_length.py:from rpy import * tools/metag_tools/short_reads_figure_score.py:from rpy import * tools/multivariate_stats/cca.py:from rpy import * tools/multivariate_stats/kcca.py:from rpy import * tools/multivariate_stats/kpca.py:from rpy import * tools/multivariate_stats/pca.py:from rpy import * tools/ngs_simulation/ngs_simulation.py:from rpy import * tools/plotting/histogram.py:from rpy import * tools/plotting/scatterplot.py:from rpy import * tools/regVariation/best_regression_subsets.py:from rpy import * tools/regVariation/linear_regression.py:from rpy import * tools/regVariation/rcve.py:from rpy import * tools/stats/cor.py:from rpy import * tools/stats/grouping.py:from rpy import * tools/stats/gsummary.py:from rpy import * tools/taxonomy/poisson2test.py:from rpy import * Specifically, what problem are you having compiling rpy 1.03? I seem to remember having to hack part of it to recognize R version strings with 2 decimal places... On Tue, Nov 16, 2010 at 2:45 PM, David Hoover <hooverdm@helix.nih.gov>wrote:
I am having great difficulty installing rpy (v1.0.3) for our local Galaxy installation. Is rpy actually supported for Galaxy? Should I even bother trying to install rpy?
David Hoover Helix Systems Staff http://helix.nih.gov _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev