Re: [galaxy-dev] how to add settings of TMPDIR=/scratch for sge/drmaa in universe_wsgi.ini

Thanks again Nate. You are right that SGE is overwriting TMPDIR. When the job runs, TMPDIR is actually set to a job specific dir like /tmp/3579.1.default.q It seems that I will have to change the SGE queue settings so that TMPDIR only set the "prefix" to /scratch that I want... but this would affect all users of the queue... We will probably have to live with that. Thanks for all your help! -Tin You might want to have a dummy tool output `set` on the cluster. Chances

are that SGE is overriding $TEMP or $TMPDIR at job runtime. You may need to set this in ~/.sge_request or use Galaxy's environment_setup_file option.

--nate